View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_37 (Length: 431)

Name: NF10481A_low_37
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_37
NF10481A_low_37
[»] chr3 (6 HSPs)
chr3 (1-427)||(19199002-19199429)
chr3 (61-406)||(6777702-6778048)
chr3 (70-331)||(1596237-1596499)
chr3 (70-331)||(34437781-34438042)
chr3 (10-57)||(34437674-34437721)
chr3 (186-258)||(21565982-21566054)
[»] chr1 (8 HSPs)
chr1 (65-427)||(43782700-43783063)
chr1 (65-427)||(45152536-45152899)
chr1 (70-331)||(48999782-49000044)
chr1 (146-331)||(40553596-40553781)
chr1 (61-427)||(3375894-3376260)
chr1 (146-331)||(33297214-33297399)
chr1 (5-57)||(45152954-45153005)
chr1 (9-59)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (65-414)||(180324-180674)
[»] chr7 (3 HSPs)
chr7 (67-427)||(12627280-12627641)
chr7 (60-308)||(1326840-1327089)
chr7 (146-331)||(38457439-38457624)
[»] chr5 (11 HSPs)
chr5 (67-250)||(26653528-26653712)
chr5 (67-250)||(26925113-26925297)
chr5 (70-270)||(13274099-13274300)
chr5 (146-401)||(2742882-2743137)
chr5 (265-364)||(26648609-26648708)
chr5 (265-364)||(26920194-26920293)
chr5 (146-202)||(21101423-21101479)
chr5 (1-57)||(26653769-26653825)
chr5 (1-57)||(26925354-26925410)
chr5 (154-275)||(24209211-24209332)
chr5 (2-57)||(21101616-21101672)
[»] chr2 (4 HSPs)
chr2 (61-406)||(31116886-31117232)
chr2 (167-331)||(28035602-28035766)
chr2 (10-57)||(28035925-28035972)
chr2 (9-57)||(31116787-31116835)
[»] scaffold0251 (2 HSPs)
scaffold0251 (66-406)||(16977-17321)
scaffold0251 (10-57)||(16875-16922)
[»] chr4 (11 HSPs)
chr4 (70-401)||(42705139-42705470)
chr4 (155-277)||(25147344-25147466)
chr4 (146-331)||(39465305-39465486)
chr4 (10-65)||(3681088-3681143)
chr4 (10-57)||(25147612-25147659)
chr4 (10-57)||(32305590-32305637)
chr4 (10-57)||(39465623-39465670)
chr4 (193-331)||(3680780-3680918)
chr4 (146-183)||(32305774-32305811)
chr4 (180-329)||(32307880-32308029)
chr4 (13-57)||(42705035-42705079)
[»] chr8 (3 HSPs)
chr8 (61-312)||(37227721-37227973)
chr8 (131-331)||(14096646-14096846)
chr8 (10-57)||(37227623-37227670)
[»] scaffold0408 (1 HSPs)
scaffold0408 (131-331)||(6988-7188)
[»] chr6 (3 HSPs)
chr6 (146-331)||(6285814-6285999)
chr6 (133-250)||(35014337-35014454)
chr6 (185-250)||(2029753-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (146-217)||(257345-257416)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 19199429 - 19199002
Alignment:
Q  1 tcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaactagatcacccctctcctgctggctgagggcatgtaga 100  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  19199429 tcaactgtgtagtcaggaatggacgcaggggggttcataataggatgtgatactctacaaaaatagatcacccctctcctactggctgaggacatgtaga 19199330  T
Q  101 g-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataa 199  Q
    | ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||| ||    
T  19199329 gcaaactctgcgaaggccataaccacgtcccctgccgtaagaggcccaatgtttgtaggaggcctgggaacagtttggacatactagtactgcctaagaa 19199230  T
Q  200 cccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctg 299  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| |||||||| |  ||||||||||||||||  ||||||||     
T  19199229 cccactctggcaagtgacataccctcttgtatttgccggccatgatccatccggagcactagcatatgttctaaaaggacgtaatgtctcgttgtctctc 19199130  T
Q  300 gtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggatcattaaatcccttaggaggtttccatcgactcaca 399  Q
    ||||||| |||||||| ||||||||||||||||| || ||||| ||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  19199129 gtacgacatccagatgacatgagaatggtccactgaatcaatggcatatctgttgtgtccaagactattaaatcccttaggaggtttccatcgactcaca 19199030  T
Q  400 agtggggctagagcatgttcgtactcat 427  Q
    || ||||| ||| |||||||||||||||    
T  19199029 agcggggcaagaacatgttcgtactcat 19199002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 406
Target Start/End: Complemental strand, 6778048 - 6777702
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    |||| |||||||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  |||||| || | || ||||||||||||||    
T  6778048 aactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtagga 6777949  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    | |||  ||||||||| ||||||| |||||||||||| ||||| || | |||||||||  ||| || |||  ||| |||||||||||||||  ||| ||     
T  6777948 gccctcagaatagtctggacatacccgtactgcctaagaaccctctctagcaagtgacggaccatcctgtcgttgtcggccatgatccatccggagcacc 6777849  T
Q  260 ggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtcc 359  Q
     ||||||||||  | ||| ||| |||| |  | |||||| ||||| ||||||| || |||| ||||| ||||   || | ||| ||  | ||| ||||||    
T  6777848 agcatatgtccttatagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatgttccaacgaatcgatggcagctctgtagtgtcc 6777749  T
Q  360 aggatcattaaatcccttaggaggtttccatcgactcacaagtgggg 406  Q
    ||||| |  ||| ||| | |||||||||||| |||||||||||||||    
T  6777748 aggattagaaaagccccttggaggtttccattgactcacaagtgggg 6777702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 331
Target Start/End: Original strand, 1596237 - 1596499
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||||| ||| ||| ||||| ||||||||| ||||||   |||||||   || |||||  |||||| || | || ||||||||||||||| |||  ||    
T  1596237 acccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtaggagccctcaga 1596336  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgt 268  Q
    ||||||| |||||||  ||||||||||| ||||| || |||||||||||  ||| || |||   ||| ||||||||||||||  ||||||  ||||||||    
T  1596337 atagtctggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgctggccatgatccatccggagtaccagcatatgt 1596436  T
Q  269 ccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    || |||||| ||| |||| |  | |||||| ||||||||||||| || |||| ||| ||||||    
T  1596437 cctgaaagggcgtgatgtgtcgtcgtctcttgtacgacctccaggtgacatgtgaacggtcca 1596499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 331
Target Start/End: Original strand, 34437781 - 34438042
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||| || | || |||||  | |||| || | || ||||||| ||||||| |||||||    
T  34437781 acccctatcctgatggctgaggacatgtagagcaaactccgtgaagacc-tggccacgtcatccgccgcaataagctcaatgtcagtaggagccctggga 34437879  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgt 268  Q
    |||||||  |||||| |||||||||||| ||||| || ||| || ||||  ||| || ||    | ||| ||||||||||||  ||||||  ||||||||    
T  34437880 atagtctgtacatacccgtactgcctaagaacccgctctggaaattgacggaccatcctgccactaccgaccatgatccatccggagtaccagcatatgt 34437979  T
Q  269 ccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    || |||||| ||| |||| |  | |||||| ||||| ||||||| || |||| ||||||||||    
T  34437980 cctgaaagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 34438042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 34437674 - 34437721
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  34437674 tagtcaggaatgggcgcagggaggttcacaataggatgtgatactcta 34437721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 21566054 - 21565982
Alignment:
Q  186 gtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac 258  Q
    ||||||||| | ||||| ||  ||||||||||| ||| |||| | |||| ||||||||||||||| |||||||    
T  21566054 gtactgcctcagaacccgctcgggcaagtgacacaccatcttttgtttgtcggccatgatccatccagagtac 21565982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 65 - 427
Target Start/End: Original strand, 43782700 - 43783063
Alignment:
Q  65 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 163  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   | |||||||||| ||||||| || || |||||||||||||||||||||||||     
T  43782700 agatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccatagccacgtcccttgacgcaagaggcccaatgtctgtaggaggca 43782799  T
Q  164 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggca 263  Q
    |||| ||||||| |||||||||||| ||||||| ||| | || |||||||||||| |||||| ||| ||||||| |||||||||||| |||||||| |||    
T  43782800 tgggtatagtctggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtctttgccgaccatgatccatccagagtactagca 43782899  T
Q  264 tatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccagga 363  Q
    ||||||  |||||| ||||||||||  |  ||||| ||| |||||||||||| |||||||||||||||   || ||||| ||| | ||| ||||||||||    
T  43782900 tatgtcgtgaaagggcgtaatgtctcgtcatctctcgtatgacctccagatgacatgagaatggtccatcgaatcaatgacatctctgtagtgtccagga 43782999  T
Q  364 tcattaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 427  Q
    |||  ||| ||| | |||||||||||| ||  |||||| ||||| |||||| | ||||| ||||    
T  43783000 tcaaaaaagcccctgggaggtttccattgatccacaagcggggcaagagcaggctcgtaatcat 43783063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 65 - 427
Target Start/End: Complemental strand, 45152899 - 45152536
Alignment:
Q  65 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 163  Q
    ||||||||| ||||| | ||||||||  ||||||||| ||||||   |||||||||||| || ||| ||| || |||||||||||||||||||||| |||    
T  45152899 agatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccatagccacatccgctgtcgcaagaggcccaatgtctgtaggatgcc 45152800  T
Q  164 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggca 263  Q
    | |||| ||||| ||||||| || ||||||||| ||||| || | |||||| |   |||| | ||| ||||||||||||||||||||| ||||||   ||    
T  45152799 taggaacagtctggacatacccgaactgcctaagaacccgctctagcaagtaatgaacccgcatgtctttgccggccatgatccatctggagtaccaaca 45152700  T
Q  264 tatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccagga 363  Q
    ||||||| |||||| ||| |||| | || ||||||  |||||| |||||||| ||||| |||||||||   || ||||| ||| | ||| |||||| |||    
T  45152699 tatgtcctgaaagggcgtgatgtgtcatcgtctctcatacgacatccagatgacatgaaaatggtccaacgaatcaatgacatgtctgtagtgtccggga 45152600  T
Q  364 tcattaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 427  Q
    ||| |||| ||  | | |||||||||| |||||||||| ||||  |||||| | ||||||||||    
T  45152599 tcagtaaaacctctggtaggtttccattgactcacaagcggggtaagagcagggtcgtactcat 45152536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 70 - 331
Target Start/End: Complemental strand, 49000044 - 48999782
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||||||  ||| |||||  | |||| || | || ||||||||||||||| |||||||    
T  49000044 acccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcctgagccacgtcatccgccgcaataagctcaatgtctgtaggagccctggga 48999945  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgt 268  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |||||||||||||||||||  ||||||  ||||||||    
T  48999944 atagtctagacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgttgccggccatgatccatccggagtaccagcatatgt 48999845  T
Q  269 ccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    || |||||| ||| |||| |  | |||||| ||||||||||||| || |||| ||||||||||    
T  48999844 cctgaaagggcgtgatgtgtcgtcgtctctcgtacgacctccaggtgacatgtgaatggtcca 48999782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 146 - 331
Target Start/End: Original strand, 40553596 - 40553781
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||  ||| || |||   |||||||||||||    
T  40553596 caatgtctgtaggagccctgggaatagtctggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgccggccatgat 40553695  T
Q  246 ccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    |||||  ||||||  |||||||||  |||||| ||| |||| |  | |||||| ||||||||||||  || |||| ||||||||||    
T  40553696 ccatccggagtaccagcatatgtcatgaaagggcgtgatgtgtcgtcgtctctcgtacgacctccaagtgacatgtgaatggtcca 40553781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 61 - 427
Target Start/End: Original strand, 3375894 - 3376260
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||   ||||| |||||| || ||| ||| |  |||||||||||| |||||||||    
T  3375894 aactagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaaggtcatagccacctcctctggcacaagaggcccaatatctgtagga 3375992  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    |  ||||||  ||||| |||||||  ||| ||||||| ||||| || |||||||||||  ||| || ||| | | ||||||||||||||||  ||||||     
T  3375993 gctctgggaccagtctggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctctaccggccatgatccatccggagtacc 3376092  T
Q  260 ggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtcc 359  Q
       |||||||| |||||| ||  ||||||  | |||||| ||||| |||||| ||| |||||||||| |||| | || || || |||   ||| ||||||    
T  3376093 aaaatatgtcctgaaagggcgccatgtctcgtcgtctctcgtacggcctccaaatgacatgagaatgctccaatgaatcattggcatcactgtggtgtcc 3376192  T
Q  360 aggatcattaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 427  Q
    |||||||  ||| ||  | |||||||||||| ||  |||||| ||||| |||||| | ||| ||||||    
T  3376193 aggatcagaaaagccactgggaggtttccattgatccacaagcggggcaagagcaaggtcgcactcat 3376260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 331
Target Start/End: Original strand, 33297214 - 33297399
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || |||||||||||  ||| || |||   || ||||||||||    
T  33297214 caatgtctgtaggagccctgggaatagtctggtcatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgtcggccatgat 33297313  T
Q  246 ccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    |||||  ||||||  |||||||||| |||| | ||| |||| |  | |||||| ||||| ||||||| || |||| ||||||||||    
T  33297314 ccatccggagtaccagcatatgtcctgaaatggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 33297399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 45153005 - 45152954
Alignment:
Q  5 ctgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    |||||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  45153005 ctgtgtagtcaggaatggccgcaggg-ggttcacaataggatgtgatactcta 45152954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 3375795 - 3375845
Alignment:
Q  9 gtagtcaggaatggacgcatggaggttcataataggatgtgatactctaca 59  Q
    |||||||||||||| |||| || |||||| ||||||||||| |||||||||    
T  3375795 gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctaca 3375845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 65 - 414
Target Start/End: Original strand, 180324 - 180674
Alignment:
Q  65 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 163  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   ||||| |||||| | ||||||||||  |||||||||||||| |||||||||||    
T  180324 agatcacccctctcctgctggctgaggacatgtagagcaaactccatgaaggtcatagccatgtcccctgccacaagaggcccaatgtttgtaggaggcc 180423  T
Q  164 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggca 263  Q
    |||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| |||||| ||| |||| |||||||||||||||  ||||||   ||    
T  180424 tgggaacagtctagacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtctttggcggccatgatccatccggagtaccaaca 180523  T
Q  264 tatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccagga 363  Q
    ||||||| |||||| | ||||||||  | |||||| ||||   ||||| ||| ||||||||  ||||| |||| ||||| ||  ||||| ||||||| ||    
T  180524 tatgtcctgaaagggcataatgtctcgtcgtctctcgtacagtctccatatgacatgagaactgtccaataaatcaatgacacctatgtagtgtccaaga 180623  T
Q  364 tcattaaatcccttaggaggtttccatcgactcacaagtggggctagagca 414  Q
    ||| |||||||||| ||| |||||||| |||||||||| ||||| ||||||    
T  180624 tcactaaatcccttgggatgtttccattgactcacaagcggggcaagagca 180674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 67 - 427
Target Start/End: Complemental strand, 12627641 - 12627280
Alignment:
Q  67 atcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 165  Q
    |||||||||||  || ||||||||| |||||||||||| |||   |||||||||||| ||  || ||| || || || ||||||||||||||||||||||    
T  12627641 atcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccatagccaccgcctctggcgcaacagtcccaatgtctgtaggaggcctg 12627542  T
Q  166 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcata 265  Q
    |||| ||||| | |||||  ||||||| ||| |||||||| |||||||||||  ||| || ||| ||||||||||||||||||||||||||||   ||||    
T  12627541 ggaacagtctgggcatacctgtactgcataagaacccactctggcaagtgacgaaccatcctgtctttgccggccatgatccatctagagtaccaccata 12627442  T
Q  266 tgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggatc 365  Q
    |||||  ||||| ||| |||| |  |  || || ||||||||| |||||| |||||||||| |||| | || ||||| ||| | ||| ||||| ||||||    
T  12627441 tgtcctaaaagggcgtcatgtgtcgtcatcactcgtacgaccttcagatgacatgagaatgctccaatgaatcaatgacatctctgtagtgtctaggatc 12627342  T
Q  366 attaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 427  Q
    |  ||||||| | ||||||||| || ||  |||||| ||||| |||||| | ||||||||||    
T  12627341 agaaaatcccctgggaggtttcgattgatccacaagcggggcaagagcagggtcgtactcat 12627280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 308
Target Start/End: Original strand, 1326840 - 1327089
Alignment:
Q  60 aaactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagg 158  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||   ||||||| || | || ||||||| ||  ||||||||||||||||||||    
T  1326840 aaaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggccgtaaccacctcccctggcgccagaggcccaatgtctgtagg 1326939  T
Q  159 aggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac 258  Q
    |||| || ||| | | | ||||||| | |||||||||| | |||  | |||||||||||  |||||||||| | ||| ||||||||||||||  ||||||    
T  1326940 aggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgcaggccatgatccatccggagtac 1327039  T
Q  259 tggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacct 308  Q
       ||||||||| ||||||  |||||||||  | |||||| |||||||||    
T  1327040 caacatatgtcctgaaagggtgtaatgtctcgtcgtctctcgtacgacct 1327089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 331
Target Start/End: Complemental strand, 38457624 - 38457439
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    |||||||||||||||  |||||||||||||  | |||| |||||||||||| |||| ||| |||||||||||  ||| || |||   |||||||||||||    
T  38457624 caatgtctgtaggagcgctgggaatagtctgaatatacccgtactgcctaagaaccaactctggcaagtgacggaccatcatgtcgctgccggccatgat 38457525  T
Q  246 ccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    |||||  ||||||  |||||||||| |||||| | | |||| |  | |||||| ||||| ||||||| || |||| ||||||||||    
T  38457524 ccatccggagtaccagcatatgtcctgaaagggcatgatgtgtcgtcgtctctcgtacgtcctccaggtgacatgtgaatggtcca 38457439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 26653712 - 26653528
Alignment:
Q  67 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 165  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26653712 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26653613  T
Q  166 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 250  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26653612 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 26925297 - 26925113
Alignment:
Q  67 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 165  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26925297 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26925198  T
Q  166 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 250  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26925197 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26925113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 270
Target Start/End: Complemental strand, 13274300 - 13274099
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||| ||||| ||||||||| |||||||||||| ||||| |||||||   || |||||  |  ||| || | || ||||| ||||||||| |||||||    
T  13274300 acccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcctaggccacgtcatccaccgcaataagctcaatggctgtaggagccctggga 13274201  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgt 268  Q
    ||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||  || |||   ||||||||||||||||||| ||||||  ||||||||    
T  13274200 atagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggacaatcctgtcgctgccggccatgatccatctggagtaccagcatatgt 13274101  T
Q  269 cc 270  Q
    ||    
T  13274100 cc 13274099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 401
Target Start/End: Complemental strand, 2743137 - 2742882
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    ||||||||||||||| |||| ||||||| | ||||||| |||||| ||||| ||||| || || |||||||   ||| || |||   |||||| ||||||    
T  2743137 caatgtctgtaggagccctgagaatagtttggacatacccgtacttcctaagaacccgctctgacaagtgatggaccatcctgtcgctgccggtcatgat 2743038  T
Q  246 ccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtca 345  Q
    |||||  ||||||  |||||||||| |||||| ||| |||| |  | |||||| ||||| ||||||| || |||| ||||||||||   || | ||| ||    
T  2743037 ccatccggagtaccagcatatgtcctgaaagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtccaacgaatcgatggca 2742938  T
Q  346 tatatgttgtgtccaggatcattaaatcccttaggaggtttccatcgactcacaag 401  Q
     || ||| ||||||||||| |  ||| ||| | |||||||||||| || |||||||    
T  2742937 gatctgtagtgtccaggattagaaaagccccttggaggtttccattgaatcacaag 2742882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 26648708 - 26648609
Alignment:
Q  265 atgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggat 364  Q
    |||||| |||| | ||||||||||  | |||||| |||||||||||||||| ||||||||||||||| | || ||||| ||| | ||| |||||||||||    
T  26648708 atgtcctgaaaaggcgtaatgtctcgtcgtctctcgtacgacctccagatgacatgagaatggtccagtgaatcaatggcatctttgtagtgtccaggat 26648609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 26920293 - 26920194
Alignment:
Q  265 atgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggat 364  Q
    |||||| |||| | ||||||||||  | |||||| |||||||||||||||| ||||||||||||||| | || ||||| ||| | ||| |||||||||||    
T  26920293 atgtcctgaaaaggcgtaatgtctcgtcgtctctcgtacgacctccagatgacatgagaatggtccagtgaatcaatggcatctttgtagtgtccaggat 26920194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 21101479 - 21101423
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataaccc 202  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||||| |||||    
T  21101479 caatgtctgtaggagccctaggaatagtctggacatacacgtactgcctaagaaccc 21101423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26653825 - 26653769
Alignment:
Q  1 tcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26653825 tcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26925410 - 26925354
Alignment:
Q  1 tcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26925410 tcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26925354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 24209211 - 24209332
Alignment:
Q  154 gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag 253  Q
    |||||||| ||| |||| |||||| |||| ||||||||||| | ||||| || |||||||||||    | || ||| |||| ||| |||||||||||  |    
T  24209211 gtaggaggtctgtgaatggtctaggcatagtcgtactgcctcagaacccgctctggcaagtgacggcacatcctgtctttgtcggtcatgatccatccgg 24209310  T
Q  254 agtactggcatatgtccggaaa 275  Q
    |||||  |||||||||| ||||    
T  24209311 agtaccagcatatgtcccgaaa 24209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 21101672 - 21101616
Alignment:
Q  2 caactgtgtagtcaggaatggacgc-atggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||||||||||| ||| | || |||||| ||||||||| |||||||||    
T  21101672 caactgtgtagtcaggaatggccgcaaggggggttcacaataggatgcgatactcta 21101616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 406
Target Start/End: Original strand, 31116886 - 31117232
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    |||| ||| |||||||| ||| ||||||||| ||||||||| |||||||  ||||| |   || |||||  ||||||||||||||  |||||||||||||    
T  31116886 aactggataacccctctgctgatggctgaggacatgtagagcaaactctatgaaggtctgggccacgtcatctgccgtaagaggcttaatgtctgtagga 31116985  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    ||||||||    |||| ||||||| |||||||||||| |||| ||| |||||||||||| ||| || | | | || |||||||||||||||   |||||     
T  31116986 ggcctgggccgtgtctggacatacccgtactgcctaagaaccgactctggcaagtgacagaccatcctatctctgtcggccatgatccatccgaagtacc 31117085  T
Q  260 ggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtcc 359  Q
     |||||| ||| ||||||   | |||  |  |  ||||| ||||| |||||||||| ||  |||||||||||  ||| ||||| ||| | ||| ||||||    
T  31117086 agcatatatcctgaaagggtctgatgcgtcgtcttctctcgtacggcctccagatgacacaagaatggtccaacaaatcaatggcatctctgtagtgtcc 31117185  T
Q  360 aggatcattaaatcccttaggaggtttccatcgactcacaagtgggg 406  Q
    ||||| |  ||| ||| | |||||||||||| |||||||||| ||||    
T  31117186 aggattagaaaagcccctgggaggtttccattgactcacaagcgggg 31117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 331
Target Start/End: Complemental strand, 28035766 - 28035602
Alignment:
Q  167 gaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatat 266  Q
    ||||||||| ||||||| | |||||||||| ||||| || | |||||||||  ||| || |||   |||||||||||||| |||  ||||||  ||||||    
T  28035766 gaatagtctggacatacccctactgcctaagaacccgctctagcaagtgacggaccatcatgtcgctgccggccatgatctatccggagtaccagcatat 28035667  T
Q  267 gtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    |||  |||||| ||| |||| || | |||||| ||||| ||||||| || |||| ||||||||||    
T  28035666 gtcttgaaagggcgtgatgtgttgtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 28035602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 28035972 - 28035925
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  28035972 tagtcaggaatggccgcatgggggttcacaataggatgtgatactcta 28035925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 31116787 - 31116835
Alignment:
Q  9 gtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    |||||||||||||| |||| || |||||| |||||||||||||||||||    
T  31116787 gtagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 31116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 406
Target Start/End: Original strand, 16977 - 17321
Alignment:
Q  66 gatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggcca--tag-ctacgtcccctgccgtaagaggcccaatgtctgtaggagg 161  Q
    |||||||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||  ||| | | |||  |||||| || | ||  ||||||||||||||     
T  16977 gatcacccctctactgatggctgaggacatgtagagcaaactctgtgaagggcacctaggccatgtcatctgccgcaataagctaaatgtctgtaggagc 17076  T
Q  162 cctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactgg 261  Q
    ||| |||||||||| ||||||| |||||| ||||| ||||| || ||| |||||||  ||| || |||   ||| |||||||||||||| |||||||  |    
T  17077 cctcggaatagtctggacatacccgtactacctaacaacccgctctggaaagtgacggaccatcctgtcgctgctggccatgatccatccagagtaccag 17176  T
Q  262 catatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccag 361  Q
    ||||||||| ||||||  || |||| |  | |||||| ||||| ||||||  || |||| ||||||||||  ||| ||||| ||  | ||| ||||||||    
T  17177 catatgtcctgaaagggtgtgatgtgtcgtcgtctctcgtacggcctccaagtgacatgtgaatggtccaacaaatcaatggcagctctgtagtgtccag 17276  T
Q  362 gatcattaaatcccttaggaggtttccatcgactcacaagtgggg 406  Q
    ||| |  ||| ||| | |||||||||||| |||||||||| ||||    
T  17277 gattagaaaagcccctgggaggtttccattgactcacaagcgggg 17321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 16875 - 16922
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  16875 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 16922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 70 - 401
Target Start/End: Original strand, 42705139 - 42705470
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  ||| || || | || ||||||||||||||| |||||||    
T  42705139 acccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgtcgcaataagctcaatgtctgtaggagccctggga 42705238  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgt 268  Q
    ||||| | ||||| | |||||||||||| ||||| || |||||||||||  ||| || |||   ||||| ||||||||||||  ||||||   |||||||    
T  42705239 atagtatggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgccgcccatgatccatccggagtaccaacatatgt 42705338  T
Q  269 ccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggatcatt 368  Q
    || |||||| ||| |||| |  | |||||| ||||| ||||||| || |||| ||||||||||  ||| | ||| ||  | ||| ||||| ||||| ||     
T  42705339 cctgaaagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtccaacaaatcgatggcagctctgtagtgtcgaggattata 42705438  T
Q  369 aaatcccttaggaggtttccatcgactcacaag 401  Q
    ||||||| | |||||||||||| || |||||||    
T  42705439 aaatcccct-ggaggtttccattgaatcacaag 42705470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 25147466 - 25147344
Alignment:
Q  155 taggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctaga 254  Q
    |||||| | |||||||||||| ||||||| |||||||||||| ||||| || |||||||||||| ||| || |||   ||||||||||||||||||  ||    
T  25147466 taggagccatgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgccggccatgatccatccgga 25147367  T
Q  255 gtactggcatatgtccggaaagg 277  Q
    ||||  |||||||||| ||||||    
T  25147366 gtaccagcatatgtcctgaaagg 25147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 331
Target Start/End: Complemental strand, 39465486 - 39465305
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    |||||||||||| || |||| ||||||||  ||||||| | |||||||||| ||||  || |||||||| ||  ||| || |||   |||||||||||||    
T  39465486 caatgtctgtagaagccctgagaatagtc--gacatacccatactgcctaagaaccggctctggcaagttacggaccatcctgtcgctgccggccatgat 39465389  T
Q  246 ccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    |||||  ||||||| |||||||||| |||||| ||| |||||   | |||||| ||||| ||||||| || |||| ||||||||||    
T  39465388 ccatccggagtactagcatatgtcctgaaagggcgtgatgtc--gtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 39465305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 3681143 - 3681088
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaacta 65  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||    
T  3681143 tagtcaggaatggtcgcaggggggttcataataggatgtgatactctaaaaaacta 3681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 25147659 - 25147612
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  25147659 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 25147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 32305590 - 32305637
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||||    
T  32305590 tagtcaggaatggccacatgggggttcacaataggatgtgatactcta 32305637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 39465670 - 39465623
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  39465670 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 39465623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 331
Target Start/End: Complemental strand, 3680918 - 3680780
Alignment:
Q  193 ctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgtccggaaaggacgtaatgtcttatt 292  Q
    |||| ||||| || |||||||||||  ||| ||||||   ||||||||||||||||||  ||||||| | || |||||  ||||| ||| |||| |  |     
T  3680918 ctaagaacccgctctggcaagtgacggaccatcttgtcgctgccggccatgatccatccggagtactagtatgtgtcctcaaagggcgtgatgtgtcgtc 3680819  T
Q  293 gtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    |||||| ||||| ||||||| || |||| ||||||||||    
T  3680818 gtctctcgtacggcctccaggtgacatgtgaatggtcca 3680780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 32305774 - 32305811
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatac 183  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32305774 caatgtctgtaggagccctgggaatagtctggacatac 32305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 32307880 - 32308029
Alignment:
Q  180 atactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactggcatatgtccggaaaggac 279  Q
    |||| |||||||||||| ||||| ||  ||||||||||  ||| || |||   || |||||||||||||||  ||||||  ||||||||||  ||||| |    
T  32307880 atacccgtactgcctaagaacccgctcaggcaagtgacggaccatcctgtcgctgtcggccatgatccatccggagtaccagcatatgtcctcaaagggc 32307979  T
Q  280 gtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtc 329  Q
    || |||| |  | |||||| ||||||| ||||| || |||| ||||||||    
T  32307980 gtgatgtgtcgtcgtctctcgtacgacttccaggtgacatgtgaatggtc 32308029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 42705035 - 42705079
Alignment:
Q  13 tcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    |||||||||| |||| || |||||| |||||||||||||||||||    
T  42705035 tcaggaatggccgcaggggggttcacaataggatgtgatactcta 42705079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 312
Target Start/End: Original strand, 37227721 - 37227973
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    |||| ||| |||||| || || ||||||||| ||||||||| |||||| | |||||||   || |||||  | |||| || | || ||||||||||||||    
T  37227721 aactggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatccgccgcaataagctcaatgtctgtagga 37227820  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    | |||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||   ||| || |||   || |||||||||||||||  |||||||    
T  37227821 gccctgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgagggaccatcctgtcgatgtcggccatgatccatccggagtact 37227920  T
Q  260 ggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccag 312  Q
     ||||||||||  ||||| ||| |||| |  | |||||| ||||| |||||||    
T  37227921 agcatatgtcctaaaagggcgtgatgtgtcgtcgtctctcgtacggcctccag 37227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 14096846 - 14096646
Alignment:
Q  131 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 230  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  14096846 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 14096747  T
Q  231 tttgccggccatgatccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcc 330  Q
      || |||||||||||||||| ||||||| || ||||||| |||||| | | |||| |  | |||||| |||||  |||||  || ||||||||||||||    
T  14096746 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagggcattatgtgtcgtcgtctctcgtacggtctccaagtgacatgagaatggtcc 14096647  T
Q  331 a 331  Q
    |    
T  14096646 a 14096646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 37227623 - 37227670
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  37227623 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 37227670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 7188 - 6988
Alignment:
Q  131 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 230  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  7188 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 7089  T
Q  231 tttgccggccatgatccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcc 330  Q
      || |||||||||||||||| ||||||| || ||||||| |||||| | | |||| |  | |||||| |||||  |||||  || ||||||||||||||    
T  7088 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagggcattatgtgtcgtcgtctctcgtacggtctccaagtgacatgagaatggtcc 6989  T
Q  331 a 331  Q
    |    
T  6988 a 6988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 331
Target Start/End: Original strand, 6285814 - 6285999
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    |||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| || || ||||||||  ||| || | |   |||  ||||||||    
T  6285814 caatgtctataggagccctgggaatagtctggacatacccgtactgcctaagaacccgctctgccaagtgacggaccatcctatcgctgctagccatgat 6285913  T
Q  246 ccatctagagtactggcatatgtccggaaaggacgtaatgtcttattgtctctggtacgacctccagatggcatgagaatggtcca 331  Q
    |||||| ||||||  ||||||||||  ||||| ||| |||| |  | || ||| ||||| ||||||  || |||| ||||||||||    
T  6285914 ccatctggagtaccagcatatgtcctcaaagggcgtgatgtgtcgtcgtgtctcgtacggcctccaagtgacatgtgaatggtcca 6285999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 35014454 - 35014337
Alignment:
Q  133 gccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatt 232  Q
    ||||||| | || |||||| |||| ||| |||| ||||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |    
T  35014454 gccgtaataagctcaatgtatgtacgagccctgtgaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgt 35014355  T
Q  233 tgccggccatgatccatc 250  Q
    ||||| ||||||||||||    
T  35014354 tgccgaccatgatccatc 35014337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 2029818 - 2029753
Alignment:
Q  185 cgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 250  Q
    |||||||||| | ||||| || |||||||||||  ||| |||| | ||||||||||||||||||||    
T  2029818 cgtactgcctcagaacccgctctggcaagtgacgcaccatcttctgtttgccggccatgatccatc 2029753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 257345 - 257416
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgac 217  Q
    |||||||||| |||| |||| ||||||||| ||||||| |||||| ||||| ||||| || |||||||||||    
T  257345 caatgtctgtgggagccctgagaatagtctggacatacccgtactacctaagaacccgctctggcaagtgac 257416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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