View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_370 (Length: 251)
Name: NF10481A_low_370
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_370 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 50764804 - 50764573
Alignment:
| Q |
1 |
gagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaaga |
100 |
Q |
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| T |
50764804 |
gagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaaga |
50764705 |
T |
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| Q |
101 |
aaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcat |
200 |
Q |
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| T |
50764704 |
aaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcat |
50764605 |
T |
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| Q |
201 |
tctgaatttgtctaacatttgactatgaacct |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
50764604 |
tctgaatttgtctaacatttgactatgaacct |
50764573 |
T |
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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 35153576 - 35153489
Alignment:
| Q |
143 |
cctctcaaattgcttcaccaa---catctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgactatga |
228 |
Q |
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| T |
35153576 |
cctctcaaattgcttcaccaataacatcttatttgaagaaaactttaagcatgg-tctcattctgaatttgtccaacatgagactatga |
35153489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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