View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_372 (Length: 251)

Name: NF10481A_low_372
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_372
NF10481A_low_372
[»] chr2 (19 HSPs)
chr2 (13-251)||(16576071-16576320)
chr2 (108-251)||(16863386-16863528)
chr2 (138-250)||(2248940-2249052)
chr2 (108-249)||(35370327-35370468)
chr2 (150-251)||(38576940-38577041)
chr2 (146-241)||(34176610-34176705)
chr2 (184-251)||(34176882-34176947)
chr2 (182-247)||(9050132-9050197)
chr2 (185-245)||(38333853-38333913)
chr2 (214-249)||(2909857-2909892)
chr2 (182-247)||(13712757-13712822)
chr2 (196-251)||(28282667-28282722)
chr2 (200-251)||(35373728-35373779)
chr2 (217-251)||(17606631-17606665)
chr2 (185-251)||(35371117-35371183)
chr2 (167-231)||(40374123-40374184)
chr2 (170-247)||(34176695-34176772)
chr2 (182-231)||(38576791-38576840)
chr2 (146-251)||(13712922-13713029)
[»] chr5 (22 HSPs)
chr5 (182-251)||(2243319-2243388)
chr5 (151-233)||(972801-972883)
chr5 (149-247)||(39808239-39808337)
chr5 (152-251)||(40483655-40483753)
chr5 (182-251)||(973114-973183)
chr5 (150-251)||(22780347-22780448)
chr5 (178-249)||(14138544-14138615)
chr5 (167-234)||(37077641-37077707)
chr5 (169-249)||(972874-972954)
chr5 (197-248)||(39730312-39730363)
chr5 (185-251)||(22780178-22780244)
chr5 (182-251)||(17736757-17736826)
chr5 (182-251)||(37077763-37077832)
chr5 (199-251)||(7113617-7113669)
chr5 (172-251)||(41264366-41264445)
chr5 (186-241)||(41264536-41264591)
chr5 (182-228)||(7215322-7215368)
chr5 (193-251)||(7215471-7215529)
chr5 (182-251)||(7982257-7982327)
chr5 (137-251)||(7982383-7982497)
chr5 (151-247)||(17736906-17737001)
chr5 (211-251)||(26105498-26105538)
[»] chr8 (15 HSPs)
chr8 (151-251)||(34695801-34695901)
chr8 (127-243)||(7590326-7590442)
chr8 (184-251)||(12736059-12736126)
chr8 (154-251)||(37010348-37010445)
chr8 (138-210)||(39280912-39280984)
chr8 (182-249)||(32166640-32166707)
chr8 (182-249)||(35574645-35574712)
chr8 (182-251)||(29969101-29969169)
chr8 (151-251)||(7405561-7405661)
chr8 (165-251)||(6630542-6630628)
chr8 (167-240)||(30547336-30547409)
chr8 (108-205)||(12782311-12782407)
chr8 (207-250)||(6630386-6630429)
chr8 (148-243)||(31475009-31475102)
chr8 (195-249)||(33897753-33897807)
[»] chr1 (22 HSPs)
chr1 (148-251)||(38839664-38839765)
chr1 (108-251)||(52432590-52432733)
chr1 (148-251)||(34601613-34601715)
chr1 (182-249)||(46080974-46081041)
chr1 (182-251)||(68100-68169)
chr1 (167-251)||(3231946-3232030)
chr1 (182-249)||(52432836-52432903)
chr1 (167-237)||(2534433-2534503)
chr1 (139-215)||(45136757-45136833)
chr1 (182-247)||(10775166-10775231)
chr1 (151-204)||(42819471-42819524)
chr1 (182-251)||(49897873-49897942)
chr1 (182-249)||(3232131-3232198)
chr1 (167-249)||(15321029-15321111)
chr1 (207-251)||(3367810-3367854)
chr1 (211-251)||(34601444-34601484)
chr1 (178-225)||(35956982-35957029)
chr1 (217-251)||(12145005-12145039)
chr1 (151-241)||(46080821-46080910)
chr1 (167-215)||(3367746-3367794)
chr1 (209-249)||(7104295-7104335)
chr1 (199-251)||(10775037-10775089)
[»] chr7 (16 HSPs)
chr7 (146-251)||(27651513-27651616)
chr7 (182-251)||(23944079-23944148)
chr7 (182-251)||(34891536-34891605)
chr7 (147-237)||(4674876-4674966)
chr7 (108-245)||(43208674-43208812)
chr7 (175-251)||(33192338-33192414)
chr7 (182-249)||(32138891-32138958)
chr7 (201-251)||(3191570-3191620)
chr7 (108-205)||(32988567-32988665)
chr7 (202-251)||(8354395-8354444)
chr7 (182-231)||(29152350-29152399)
chr7 (182-234)||(8900670-8900722)
chr7 (212-251)||(33362415-33362454)
chr7 (152-249)||(29152493-29152587)
chr7 (185-251)||(34891371-34891437)
chr7 (195-247)||(31152738-31152790)
[»] chr3 (14 HSPs)
chr3 (137-231)||(7641806-7641900)
chr3 (146-249)||(54437604-54437707)
chr3 (182-248)||(39341202-39341268)
chr3 (167-251)||(13283843-13283927)
chr3 (167-247)||(21570356-21570436)
chr3 (148-248)||(7938035-7938136)
chr3 (184-251)||(42091794-42091861)
chr3 (108-251)||(46303299-46303442)
chr3 (182-246)||(54437809-54437873)
chr3 (167-246)||(6138487-6138566)
chr3 (197-251)||(20519299-20519353)
chr3 (153-251)||(34762125-34762222)
chr3 (167-204)||(20519519-20519556)
chr3 (178-247)||(48646411-48646479)
[»] chr4 (10 HSPs)
chr4 (182-251)||(15131578-15131647)
chr4 (158-249)||(20512832-20512923)
chr4 (182-245)||(25062493-25062556)
chr4 (182-251)||(22050855-22050924)
chr4 (207-251)||(22050725-22050769)
chr4 (185-248)||(4115389-4115452)
chr4 (212-251)||(25062352-25062391)
chr4 (193-251)||(25234203-25234261)
chr4 (182-251)||(20512671-20512740)
chr4 (171-231)||(44591971-44592031)
[»] chr6 (9 HSPs)
chr6 (195-247)||(32047190-32047242)
chr6 (193-247)||(23577165-23577219)
chr6 (182-248)||(32342603-32342669)
chr6 (167-251)||(20067904-20067988)
chr6 (168-228)||(20206481-20206541)
chr6 (168-228)||(22100504-22100564)
chr6 (182-249)||(20068089-20068155)
chr6 (199-251)||(7556119-7556171)
chr6 (148-204)||(32046954-32047010)
[»] scaffold1743 (1 HSPs)
scaffold1743 (167-249)||(772-853)
[»] scaffold0564 (1 HSPs)
scaffold0564 (108-233)||(5456-5582)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 16576071 - 16576320
Alignment:
Q  13 attctctatagttacgtataaaagatatttggttcacaccaaaaatatgt-----------ttaagaagaaaaataagtgaccaacttcccatgtagata 101  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  16576071 attctctatagttgtgcataaaagatatttggttcacaccaaaaatatgtttaagacatgtttaagaagaaaaataagtgaccaacttcccatgtagata 16576170  T
Q  102 atgatattttctacattacctctagatgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccat 201  Q
    |||||||||||||||||| |  ||||| ||||||||||||||  |||||||||||||||||| ||||||||||| |||| |||||||||| | |||||||    
T  16576171 atgatattttctacattatccttagatcaattggcgtaatttagccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccat 16576270  T
Q  202 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16576271 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 16576320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 16863386 - 16863528
Alignment:
Q  108 ttttctacattacctctagatgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcct 207  Q
    |||||||||||||| |   ||||||||| |||||||  || |||||||||||||||   |||||||| |||||||||||||||| ||||||||||||| |    
T  16863386 ttttctacattaccccaccatgaattggggtaatttatccatatcaaagaaaaattcctttttcttc-tctttattcttacaatcagttaccattttcat 16863484  T
Q  208 ctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||||||||| |||||||||| ||| |||||| ||||||    
T  16863485 ctcaagaacatcaaatttcttcatcttctttattcaatatgtga 16863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 2249052 - 2248940
Alignment:
Q  138 taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 237  Q
    |||||| || |||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||    
T  2249052 taatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatcttctt 2248953  T
Q  238 cattcaacatgtg 250  Q
     ||| ||||||||    
T  2248952 aattgaacatgtg 2248940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 35370327 - 35370468
Alignment:
Q  108 ttttctacattacctctagatgaattggc-gtaatttgcccctatcaaagaaaaattttcttttcttcatctttat--tcttacaattagttaccatttt 204  Q
    |||||||||||||| || |||||||| |  ||||||  || |||||||||||||||   ||||||||||||||||   ||||||||| ||||||||||||    
T  35370327 ttttctacattaccccttgatgaattagtagtaattgaccactatcaaagaaaaat---cttttcttcatctttacgatcttacaatcagttaccatttt 35370423  T
Q  205 cctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
      ||||||||| | ||||||||||| |||||||||||||||||||    
T  35370424 aatctcaagaataccaaacttcttcgtctccttcattcaacatgt 35370468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 38577041 - 38576940
Alignment:
Q  150 atcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||||| |  |||||||||| |||||| ||| ||| ||||||||||||| ||| |||||||| ||| ||||||||||| ||||||||||||||    
T  38577041 atcaaagaaaaatctcattttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgt 38576942  T
Q  250 ga 251  Q
    ||    
T  38576941 ga 38576940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 34176610 - 34176705
Alignment:
Q  146 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcatt 241  Q
    |||||| | |||| |||| | |||||||||||||||||  |||||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  34176610 ccctattagagaacaattatattttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcatt 34176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 34176882 - 34176947
Alignment:
Q  184 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||||||||| ||||||||||  ||||||| | ||||| |||||||||||||||||    
T  34176882 cttacaattagttaccattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtga 34176947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 9050197 - 9050132
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||| || ||||||||||||| | | ||||||| ||||||||||||||||| |||||||||||    
T  9050197 ttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacat 9050132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 38333913 - 38333853
Alignment:
Q  185 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 245  Q
    |||||||||||||| |||||| ||||||||||||| |||||||| ||||| ||| ||||||    
T  38333913 ttacaattagttactattttcatctcaagaacatctaacttcttaatctctttcgttcaac 38333853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 2909857 - 2909892
Alignment:
Q  214 aacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  2909857 aacatcaaacttcttcatctccttcattcaacatgt 2909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 13712822 - 13712757
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||| || ||||||||||| | ||| |||||||||||||||||| |||| ||| |||||||||    
T  13712822 ttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacat 13712757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 28282667 - 28282722
Alignment:
Q  196 taccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| |||| | ||||||||||||||| |||| |||||||||| ||||||    
T  28282667 taccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtga 28282722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 35373728 - 35373779
Alignment:
Q  200 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||| |||||||||| |||||||||||| |  ||||||||||||||||||    
T  35373728 attttcatctcaagaacgtcaaacttcttctttaccttcattcaacatgtga 35373779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 17606665 - 17606631
Alignment:
Q  217 atcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||| |||||||||||||||||||||||||    
T  17606665 atcaaacttgttcatctccttcattcaacatgtga 17606631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 35371117 - 35371183
Alignment:
Q  185 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| | ||||||||||| | ||||||||||||||||||||  |  |||||||| |||||||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtga 35371183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 40374184 - 40374123
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 231  Q
    ||||||||||||||||| ||| |||||||||||| |||| | ||   ||||||||||||||||||    
T  40374184 ttttcttcatctttattattaaaattagttaccactttcatatc---aacatcaaacttcttcat 40374123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 34176695 - 34176772
Alignment:
Q  170 tcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||| || ||| ||||||||| |||||| ||| ||  || | |||||||||| |||||||||||||||||| |||||    
T  34176695 tcttcttcattactcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctccttcatttaacat 34176772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 38576840 - 38576791
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 231  Q
    |||||||||| ||||||||||||| |||||| |  |||||||||||||||    
T  38576840 ttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 13713029 - 13712922
Alignment:
Q  146 ccctatcaaagaaaaat--tttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattca 243  Q
    |||||||||||||||||  | | |||| || || ||||||| ||||||  |||||||||||  ||| || ||  |||||||| || |||||||||||| |    
T  13713029 ccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcattta 13712930  T
Q  244 acatgtga 251  Q
    ||||||||    
T  13712929 acatgtga 13712922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 2243388 - 2243319
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtga 2243319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 972801 - 972883
Alignment:
Q  151 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatct 233  Q
    ||||||||||| ||  |||| ||| |||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  972801 tcaaagaaaaaattcatttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 39808337 - 39808239
Alignment:
Q  149 tatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||||||||||| |||||| ||||| |||||||||| ||  ||||| |||||||  || |||| |||||||||| ||||||||||||||| |||||    
T  39808337 tatcaaagaaaaattctcttttattcatatttattcttaaaacaagttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacat 39808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 40483655 - 40483753
Alignment:
Q  152 caaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| ||  |||| |||||||||||||||| || || |||| |||||| ||| || |||||||||||||||||||||  |||||||||||||||    
T  40483655 caaagaaaaaattcatttttttcatctttattcttaaaaatatttactattttcatctaaa-aacatcaaacttcttcatctcactcattcaacatgtga 40483753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 973114 - 973183
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||| ||||||  |||||| ||||| ||| |||||||||||||| |||||||||||||    
T  973114 ttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtga 973183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 22780448 - 22780347
Alignment:
Q  150 atcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||||  |  ||||||| ||||||| | || |||| ||| ||||||||| |||||| ||||  |||||||||||| |||||||||||||||||    
T  22780448 atcaaagaaaaaactcattttcttaatctttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgt 22780349  T
Q  250 ga 251  Q
    ||    
T  22780348 ga 22780347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 14138544 - 14138615
Alignment:
Q  178 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||||||||||||| | ||||||||||| ||| ||||| |||||||||  ||||||| ||||||||||||||    
T  14138544 tttattcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgt 14138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 37077641 - 37077707
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctc 234  Q
    |||||| |||||||||||||| ||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  37077641 ttttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 972874 - 972954
Alignment:
Q  169 ttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||||||| ||  ||| |||| |||||||| || |||||| |||||| ||||||||||| |||||| |||||||    
T  972874 ttcttcatctttatttttgaaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgt 972954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 39730363 - 39730312
Alignment:
Q  197 accattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 248  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||| ||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 22780244 - 22780178
Alignment:
Q  185 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| ||||||||||||  | |||| |||||||||||| ||||||| | |||||||||||||||    
T  22780244 ttacaatcagttaccatttttatttcaataacatcaaactttttcatctacgtcattcaacatgtga 22780178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 17736826 - 17736757
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||  | ||||||||||| |||||| || || |||||||||||||| ||||| |||||||||||    
T  17736826 ttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtga 17736757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 37077763 - 37077832
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| ||||| ||||||| |||||| ||||||||| ||||| || |  ||||||||||||||||    
T  37077763 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtga 37077832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 7113669 - 7113617
Alignment:
Q  199 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| ||||||||| || ||||||||||||||| |||||||||| |||||    
T  7113669 cattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtga 7113617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 41264366 - 41264445
Alignment:
Q  172 ttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||| | | ||| ||||  ||||||| |||||||||||| |||||| ||||| |  ||||||||||||||||    
T  41264366 ttcatctttattatgataatgagttgtcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtga 41264445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 41264536 - 41264591
Alignment:
Q  186 tacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcatt 241  Q
    |||||| |||||| |||||| | |||||||||||||| ||||||||||| ||||||    
T  41264536 tacaatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatt 41264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 7215368 - 7215322
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttctt 228  Q
    |||||||||| |  |||||||||| ||||||||||||||||||||||    
T  7215368 ttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 7215529 - 7215471
Alignment:
Q  193 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||| |||||| | |||||||||| |||||| ||||| | |||||||||||||||||    
T  7215529 agttactattttcatatcaagaacattaaactttttcatattcttcattcaacatgtga 7215471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 7982327 - 7982257
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaactt-cttcatctccttcattcaacatgtga 251  Q
    |||| ||||||||||| ||||||  |||||| |||||  || || ||||||||||||||||||||||||||    
T  7982327 ttctcacaattagttatcatttttatctcaaaaacatttaagtttcttcatctccttcattcaacatgtga 7982257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 7982497 - 7982383
Alignment:
Q  137 gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcct 236  Q
    ||||||| ||||| |||||||||| |||    || || ||||||||| ||| ||| ||||||||||||| |||  ||||||||||| ||||||  ||| |    
T  7982497 gtaatttacccctttcaaagaaaattttcacctttttaatctttattgttaaaatcagttaccattttcatcttgagaacatcaaatttcttcgactctt 7982398  T
Q  237 tcattcaacatgtga 251  Q
    || || |||||||||    
T  7982397 tcttttaacatgtga 7982383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 17737001 - 17736906
Alignment:
Q  151 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    |||||||||||| || |||| |||||||||| |||||||||   ||||||||||  ||| ||||| |||||| ||||| | || |||| ||||||||    
T  17737001 tcaaagaaaaatcttatttttttcatcttta-tcttacaatcgattaccatttttatcttaagaatatcaaatttctttaccttcttccttcaacat 17736906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 26105538 - 26105498
Alignment:
Q  211 aagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||||||||||| |||||||||||||  ||||||||    
T  26105538 aagaacatcaaacttctccatctccttcatttcacatgtga 26105498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 34695801 - 34695901
Alignment:
Q  151 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 250  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| | |||| |  |||||| ||||||| |||||||||||||||||||    
T  34695801 tcaaagaaaaattctcttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtg 34695900  T
Q  251 a 251  Q
    |    
T  34695901 a 34695901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 7590442 - 7590326
Alignment:
Q  127 atgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttc 226  Q
    ||||||||  ||||||| ||||||| | ||||||| |   |||||||| ||||||||||||||||  ||||||| |||| | |||||||||||||| |||    
T  7590442 atgaattgaggtaatttacccctattatagaaaaactcatttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttc 7590343  T
Q  227 ttcatctccttcattca 243  Q
    ||||||| |||||||||    
T  7590342 ttcatcttcttcattca 7590326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 12736059 - 12736126
Alignment:
Q  184 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||||||| | ||| || ||||||||||||||||||||||||| ||||||||||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtga 12736126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 37010445 - 37010348
Alignment:
Q  154 aagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||| ||  |||| |||||||||||| | | ||||||||||||||||| |||||| |||||||||||| ||||| || |||||| |||||||||    
T  37010445 aagaaaaaattcatttttttcatctttattttaaaaattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtga 37010348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 39280912 - 39280984
Alignment:
Q  138 taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctc 210  Q
    |||||| ||||||||||||||||||   |||||||||||||||||||||| ||| ||||||||||||| ||||    
T  39280912 taatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccattttcatctc 39280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 32166707 - 32166640
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  32166707 ttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgt 32166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 35574712 - 35574645
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||||||||| |||||| ||| |||||||||||| || |||||||| ||||||||||||||    
T  35574712 ttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgt 35574645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 29969101 - 29969169
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| ||||||||||||  | ||||||||||||||||||||| || ||||||||||||||||||    
T  29969101 ttcttacaatcagttaccattttttt-tcaagaacatcaaacttcttcttccccttcattcaacatgtga 29969169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 7405661 - 7405561
Alignment:
Q  151 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 250  Q
    |||||||||||||   ||| ||| ||||||||||||| ||||||||   |||||  | ||||| ||||||||| |||||||||||| |||||||||||||    
T  7405661 tcaaagaaaaattccatttactttatctttattcttaaaattagttgttatttttatgtcaagcacatcaaacgtcttcatctcctacattcaacatgtg 7405562  T
Q  251 a 251  Q
    |    
T  7405561 a 7405561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 6630628 - 6630542
Alignment:
Q  165 tcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| |||||||||||  ||| | ||||||||||| ||| |||| ||| ||| |||||||||||||||||| |||| ||||    
T  6630628 tcttttcttcgtctttattcttcaaatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtga 6630542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 30547409 - 30547336
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcat 240  Q
    |||||||||| ||||||||| ||| || |||| |||||  |||||| |||| ||||||||||||||||||||||    
T  30547409 ttttcttcatttttattcttccaaatatttactatttttatctcaaaaacaacaaacttcttcatctccttcat 30547336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 12782311 - 12782407
Alignment:
Q  108 ttttctacattacctctagatgaat-tggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttc 205  Q
    ||||||||||||||||| ||||||| ||| ||||||| ||  |||||||||||| |  |||||| |||||||||||||||||||| | |||| ||||||    
T  12782311 ttttctacattacctcttgatgaatgtggagtaatttacca-tatcaaagaaaagtcctctttt-ttcatctttattcttacaatcaattactattttc 12782407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 6630429 - 6630386
Alignment:
Q  207 tctcaagaacatcaaacttcttcatctccttcattcaacatgtg 250  Q
    ||||||||||||||||||| |||||||  |||||||||||||||    
T  6630429 tctcaagaacatcaaactttttcatctttttcattcaacatgtg 6630386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 31475009 - 31475102
Alignment:
Q  148 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattca 243  Q
    |||||||||||||||  | |||||||| |||| ||| ||  ||| |||||| |||||  ||||||||||||||||||||||||||| ||| |||||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttcttgattca 31475102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 33897753 - 33897807
Alignment:
Q  195 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||| |||||| |||||| ||||||||| ||||| || |||||||||||||||||    
T  33897753 ttactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgt 33897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 38839765 - 38839664
Alignment:
Q  148 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||||||||||| |  |||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||| |||||||| ||||    
T  38839765 ctatcaaagaaaaatctaatttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcgacat 38839668  T
Q  248 gtga 251  Q
    ||||    
T  38839667 gtga 38839664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 52432590 - 52432733
Alignment:
Q  108 ttttctacattacctctagatgaatt-ggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 206  Q
    ||||||||||||||||| |||||||| || ||||||| ||  ||||||| || ||  |  | || |||||||||||||||| ||| | |||||||||||     
T  52432590 ttttctacattacctcttgatgaatttggggtaatttaccattatcaaataataaaatcatatt-ttcatctttattcttataatcaattaccattttca 52432688  T
Q  207 tctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||    
T  52432689 tctcaagaacattaaacttcttcatctccttcatttaacaagtga 52432733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 34601715 - 34601613
Alignment:
Q  148 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||  |||||| |||||| |||||||||| | ||||||| ||| |||||||||    
T  34601715 ctataaaagaaaaatctcattttcttcatctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacat 34601617  T
Q  248 gtga 251  Q
    ||||    
T  34601616 gtga 34601613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 46080974 - 46081041
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  46080974 ttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgt 46081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 68100 - 68169
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| ||||||||||||  | ||||||||||| ||||||||||||||||||||| |||||||||    
T  68100 ttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtga 68169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 3231946 - 3232030
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| |||||  ||||||| |||| | |||||| ||||||||||| ||||||||||||| || ||||||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtga 3232030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 52432836 - 52432903
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||| | |||||||| ||||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattttcttcattcgacatgt 52432903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 2534503 - 2534433
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 237  Q
    ||||||||||||||||| ||| ||| | |||||| |||| |||||| ||||||||||||||||||||||||    
T  2534503 ttttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatctcctt 2534433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 45136833 - 45136757
Alignment:
Q  139 aatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaa 215  Q
    ||||| |||||||||||||||||| |  ||||||||||||||||||||||||| |||||  |||||| || ||||||    
T  45136833 aatttacccctatcaaagaaaaatctcattttcttcatctttattcttacaatcagttattattttcatcgcaagaa 45136757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 10775166 - 10775231
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    |||||| ||| | ||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
T  10775166 ttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 42819471 - 42819524
Alignment:
Q  151 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccatttt 204  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||||||||    
T  42819471 tcaaagaaaaatcctcttttcttcatatttattcttaaaattagttaccatttt 42819524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 49897873 - 49897942
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| |||| ||||||||||   ||||||||| || ||||||||| |||||||||||||||||||||    
T  49897873 ttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtga 49897942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 3232131 - 3232198
Alignment:
Q  182 ttcttacaattagttaccattttc-ctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||||||||||||||||   ||||||||||||  |||||||||||| |||||||||||||||    
T  3232131 ttcttacaattagttaccattttcaacctcaagaacatc-cacttcttcatcttcttcattcaacatgt 3232198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 15321029 - 15321111
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||||| ||| ||||||  ||||  ||||||| |||||| ||||| ||| || ||||| |||||||||||||||||    
T  15321029 ttttcttcatcttaattattacaacgagttgtcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgt 15321111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 3367810 - 3367854
Alignment:
Q  207 tctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||| || |||||||| ||||||||||||||||    
T  3367810 tctcaagaacatcaaattttttcatctcattcattcaacatgtga 3367854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 34601484 - 34601444
Alignment:
Q  211 aagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  34601484 aagaacatcaaacttcctcatctcctttattcaacatgtga 34601444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 35956982 - 35957029
Alignment:
Q  178 tttattcttacaattagttaccattttcctctcaagaacatcaaactt 225  Q
    |||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  35956982 tttattcttacaattaattaccatttttatctcaaaaacatcaaactt 35957029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 12145005 - 12145039
Alignment:
Q  217 atcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||||| ||||||||||||||||    
T  12145005 atcaaacttcttcatctcattcattcaacatgtga 12145039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 46080821 - 46080910
Alignment:
Q  151 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcatt 241  Q
    |||||||||||| |  |||||||||| |||||||| | |||   ||||||||||  ||| |||||||||||| ||||||||||| ||||||    
T  46080821 tcaaagaaaaatctcattttcttcatttttattctcagaatcgattaccatttttatcttaagaacatcaaa-ttcttcatctctttcatt 46080910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 3367746 - 3367794
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaa 215  Q
    |||||||||||||||||||||| || ||||| | ||||| |||||||||    
T  3367746 ttttcttcatctttattcttacgatcagttatcgttttcatctcaagaa 3367794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 7104295 - 7104335
Alignment:
Q  209 tcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||| || ||| ||||||||||||||||||||||||||    
T  7104295 tcaagaatattaaatttcttcatctccttcattcaacatgt 7104335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 10775037 - 10775089
Alignment:
Q  199 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| |||| ||||||||||| |||||| |||  ||||||||||||||||    
T  10775037 cattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtga 10775089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 27651616 - 27651513
Alignment:
Q  146 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 245  Q
    ||||||||||||||||||   ||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||  | ||||||||||||||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaa-tagtaaccattttcatctcaagaacatcaaacaac-tcatctccttcattcaac 27651519  T
Q  246 atgtga 251  Q
    ||||||    
T  27651518 atgtga 27651513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 23944079 - 23944148
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||    
T  23944079 ttcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtga 23944148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 34891536 - 34891605
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| |||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  34891536 ttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtga 34891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 4674876 - 4674966
Alignment:
Q  147 cctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 237  Q
    ||||||||| ||||| |  |||||||| ||||||||| ||  ||||||||||||||||| ||||||||| ||||||||| || ||||||||    
T  4674876 cctatcaaacaaaaactcccttttctttatctttatttttgaaattagttaccattttcatctcaagaaaatcaaacttatttatctcctt 4674966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 43208674 - 43208812
Alignment:
Q  108 ttttctacattacctctagatgaattg-gcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 206  Q
    |||||||||||| | || ||||||||| | |||||||  ||||||| || ||||| ||  ||||||||||||||||||||||||| | ||||||||||      
T  43208674 ttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttatttttcttcatctttattcttacaatcaattaccattttta 43208773  T
Q  207 tctcaagaacatcaaacttcttcatctccttcattcaac 245  Q
    | | ||||| |||||| | |||||| |||||| ||||||    
T  43208774 ttttaagaatatcaaattccttcatttccttcgttcaac 43208812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 33192414 - 33192338
Alignment:
Q  175 atctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||| |||||| |||||||||||||| ||||||||| || ||| ||||| ||||| ||||||||||| ||||    
T  33192414 atctttatttttacaagtagttaccattttcttctcaagaatattaaatttctttatctctttcattcaacaagtga 33192338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 32138958 - 32138891
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||||| ||| | ||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||    
T  32138958 ttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgt 32138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 3191620 - 3191570
Alignment:
Q  201 ttttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||| |||||| ||||||||| |||||||||||||| |||||||||||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtga 3191570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 32988665 - 32988567
Alignment:
Q  108 ttttctacattacctctagatgaattggcg-taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttc 205  Q
    |||| ||||||| | || |||||||||| | |||||| | | ||||||||||||||  | ||||||||||||||||||||||||| || || |||||||    
T  32988665 ttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcattttc 32988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 8354444 - 8354395
Alignment:
Q  202 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||| |||||||||||| |||||||| ||| |||||||||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtga 8354395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 29152399 - 29152350
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 231  Q
    |||||||||| |||||| |||||| |||||| ||||||||||||||||||    
T  29152399 ttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 8900722 - 8900670
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctc 234  Q
    |||||||||| | ||||||||||  ||||||||||| ||||||||||||||||    
T  8900722 ttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 33362454 - 33362415
Alignment:
Q  212 agaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  33362454 agaacatcaaactttttaatctccttcattcaacatgtga 33362415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 29152587 - 29152493
Alignment:
Q  152 caaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    ||||||||||| | ||||||||||||||||||||   |||||| | | |||||  |||||| ||||| ||| || ||||||| |||||||||||||||    
T  29152587 caaagaaaaatctccttttcttcatctttattct--gaattagctgcgatttttatctcaaaaacattaaa-tttttcatctacttcattcaacatgt 29152493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 34891371 - 34891437
Alignment:
Q  185 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||  ||| ||||||| | | |||||||||||||||||| |||| ||||||| |||||||||    
T  34891371 ttacaattcattatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtga 34891437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 31152790 - 31152738
Alignment:
Q  195 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||||||| ||| || |||||||| ||||||||| || ||||||||||||    
T  31152790 ttaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 7641806 - 7641900
Alignment:
Q  137 gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 231  Q
    ||||||| |||||||||||||||| |||  ||||||||| ||||||||||| ||| ||||| ||||||  | ||||||||||||||||| |||||    
T  7641806 gtaatttacccctatcaaagaaaattttcattttcttcaactttattcttaaaatcagttatcatttttatatcaagaacatcaaactttttcat 7641900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 54437604 - 54437707
Alignment:
Q  146 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 245  Q
    ||||||||||| ||||  |  ||||| ||||||||||| ||||||  | ||||||||||| |||||| ||||| |||||||||||| ||||||||| |||    
T  54437604 ccctatcaaaggaaaaactcattttcctcatctttattattacaacaaattaccattttcatctcaataacattaaacttcttcatatccttcatttaac 54437703  T
Q  246 atgt 249  Q
    ||||    
T  54437704 atgt 54437707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 39341202 - 39341268
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 248  Q
    ||||||| || ||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||    
T  39341202 ttcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatg 39341268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 13283927 - 13283843
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||||||| |||| | || | |||||| || |||||||||||||||| |||| ||| |||||||||| |||||    
T  13283927 ttttcttcatctttattctttcaatcaattgctattttcatcacaagaacatcaaacttattcaactcattcattcaacgtgtga 13283843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 21570356 - 21570436
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||| ||||||||||||||||||  |||| |||||| || |||||||||||||||| |||||||  ||| ||||||||    
T  21570356 ttttctttatctttattcttacaattgattactattttcatcacaagaacatcaaactttttcatctaattcgttcaacat 21570436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 7938035 - 7938136
Alignment:
Q  148 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttacca--ttttcctctcaagaacatcaaacttcttcatctccttcattcaac 245  Q
    |||||||||||||||| | |||||||||||||||||||||| ||  ||| | |  ||||| |||||| ||||||||| || || ||||||||||||||||    
T  7938035 ctatcaaagaaaaattatattttcttcatctttattcttacgatccgttgctattttttcatctcaaaaacatcaaa-ttttttatctccttcattcaac 7938133  T
Q  246 atg 248  Q
    |||    
T  7938134 atg 7938136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 42091861 - 42091794
Alignment:
Q  184 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| ||| ||||||| |||||| |||||||||||| |||||||| |||||| |||||||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtga 42091794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 46303299 - 46303442
Alignment:
Q  108 ttttctacattacctctagatgaattggc-gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 206  Q
    ||||||||||||   || ||||||||||  ||||||| | |||||||||||||||| |  |||| |||||| || |||||||||| |  || ||||||      
T  46303299 ttttctacattattccttgatgaattgggagtaatttactcctatcaaagaaaaatctattttttttcatcatt-ttcttacaatcaaatatcattttta 46303397  T
Q  207 tctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||  ||| |||||||||||||||||| ||| |||||||||||||    
T  46303398 tctatagagcatcaaacttcttcatcttctttattcaacatgtga 46303442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 54437809 - 54437873
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaaca 246  Q
    |||||||||| ||||||||||||  |||||| |||||||||||||||||||| | ||||| ||||    
T  54437809 ttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaaca 54437873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 6138487 - 6138566
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaaca 246  Q
    |||||||||||||||||||| |||| | || | |||||| || |||||||||||| ||| |||| ||| |||||||||||    
T  6138487 ttttcttcatctttattctttcaatcaattgctattttcatcacaagaacatcaaccttattcaactcattcattcaaca 6138566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 20519353 - 20519299
Alignment:
Q  197 accattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||| |||||||||| ||||| ||||||||||| |||||| |||||||||    
T  20519353 accattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtga 20519299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 34762222 - 34762125
Alignment:
Q  153 aaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||||| | |||| || |||||||||||||||||| ||||| |||||  | | || ||||||||| || |||||||| ||||||||||| ||||    
T  34762222 aaagaaaaattctatttttttaatctttattcttacaattggttactatttt-atatgaaaaacatcaaatttattcatctcattcattcaacacgtga 34762125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 20519556 - 20519519
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccatttt 204  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  20519556 ttttcttcatctttcttcttacaatcagttaccatttt 20519519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 48646411 - 48646479
Alignment:
Q  178 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    |||||||||| ||| | | ||||||||| ||| ||||||||||||||| ||||| | |||||||||||||    
T  48646411 tttattcttataatcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacat 48646479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 15131647 - 15131578
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| || ||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||    
T  15131647 ttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtga 15131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 20512923 - 20512832
Alignment:
Q  158 aaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||||||  ||||||||||||||||| ||| ||| | ||  ||||||| ||| |  |||||||||||||||||||| ||||||| |||||||    
T  20512923 aaaatttcattttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgt 20512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 25062493 - 25062556
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 245  Q
    |||||||||| | ||||| ||||| ||||||||| ||||||||||||||||| |||| ||||||    
T  25062493 ttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaac 25062556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 22050855 - 22050924
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||| ||||||  ||| || ||||  ||  ||||||||||||||||||||||||||||    
T  22050855 ttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtga 22050924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 22050725 - 22050769
Alignment:
Q  207 tctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||    
T  22050725 tctcaacaacatcaaacttcttcatttccttcatttaacatgtga 22050769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  185 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 248  Q
    |||| |||| ||||||||||  ||| |||||||| |||||||| |||||| |||||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 25062352 - 25062391
Alignment:
Q  212 agaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtga 25062391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 25234261 - 25234203
Alignment:
Q  193 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||||  |||| ||||||    
T  25234261 agttaccattttcatctcaagaacatcaaatttcttaatatccttccgtcaatatgtga 25234203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 20512740 - 20512671
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||||||||| | ||||| |||||| ||||| ||  |||||||| | ||||||| |||||||||    
T  20512740 ttcttacaattagttatctttttcatctcaaaaacattaagtttcttcatattcttcattgaacatgtga 20512671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 44592031 - 44591971
Alignment:
Q  171 cttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 231  Q
    ||||||| ||||| ||||||  |||||| |||||| |||||| ||||| ||||||||||||    
T  44592031 cttcatcattattattacaacaagttactattttcatctcaaaaacattaaacttcttcat 44591971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 32047190 - 32047242
Alignment:
Q  195 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacat 32047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 23577165 - 23577219
Alignment:
Q  193 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 247  Q
    ||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||    
T  23577165 agttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacat 23577219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 32342603 - 32342669
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 248  Q
    |||||||||| | ||| ||||||| |||||| |||||||||||| |||||||| |||||||||||||    
T  32342603 ttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 20067904 - 20067988
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    |||||||||| |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||| ||  |||| ||||||||||||    
T  20067904 ttttcttcatttttattcttagaatcagttatcattttcatctcaataacattatacttcttcttcatcttccttcaacatgtga 20067988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 20206541 - 20206481
Alignment:
Q  168 tttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttctt 228  Q
    ||||||| | |||||||||||||| | ||| ||||||| |||||| |||||||||||||||    
T  20206541 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 22100564 - 22100504
Alignment:
Q  168 tttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttctt 228  Q
    ||||||| | |||||||||||||| | ||| ||||||| |||||| |||||||||||||||    
T  22100564 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 20068089 - 20068155
Alignment:
Q  182 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||||||||| ||| ||||||||| | |  ||||||||||||||| ||||||| ||||||||||||||    
T  20068089 ttcttacaatcagt-accattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgt 20068155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 7556171 - 7556119
Alignment:
Q  199 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 251  Q
    ||||||| |||||||||||| ||| || ||||| || ||||||||||||||||    
T  7556171 cattttcatctcaagaacattaaatttattcatatcattcattcaacatgtga 7556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 32046954 - 32047010
Alignment:
Q  148 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccatttt 204  Q
    |||||||||||||||| | ||||||  ||||||||||||||||| | ||| ||||||    
T  32046954 ctatcaaagaaaaattctattttctctatctttattcttacaatcaattatcatttt 32047010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 772 - 853
Alignment:
Q  167 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 249  Q
    |||||||||| |||||| ||||| | | ||| ||||||||| ||||| | ||||||||||||||||||||| |||||||||||    
T  772 ttttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

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Target: scaffold0564 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 5582 - 5456
Alignment:
Q  108 ttttctacattacctctagatgaattggcg-taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 206  Q
    |||||||||||||||||  | ||||||  | |||||| ||| ||||||| ||||||    |||||||||||||||| |||| ||| || ||| ||||||     
T  5582 ttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaattttca 5483  T
Q  207 tctcaagaacatcaaacttcttcatct 233  Q
    |||||| || |||||||||||||||||    
T  5482 tctcaaaaagatcaaacttcttcatct 5456  T

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