View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_373 (Length: 251)
Name: NF10481A_low_373
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_373 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 39526600 - 39526839
Alignment:
| Q |
12 |
tgttagataaaaagcaaatttggataatcattcggaatttgaatctgatgatgtcgattgtaaggttagcgggtaccttctccccaagcatgtgtttctc |
111 |
Q |
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| T |
39526600 |
tgttagataaaaagcaaatttggataatcattcggaatttgaatctgatgatgtcgattgcaaggttagcgggtatcttctccccaagcatgtgtttctc |
39526699 |
T |
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| Q |
112 |
ttgctttcaatttgttgggctatgtcatgggattgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcga |
211 |
Q |
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| T |
39526700 |
ttgctttcaatttgttgggctatgtcataggattgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcga |
39526799 |
T |
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| Q |
212 |
ttacgttgtgtgttcatgataaagatgaaggtgggtttga |
251 |
Q |
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| T |
39526800 |
ttacgttgtgtgttcatgataaagatgaaggtgggtttga |
39526839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 43699048 - 43698858
Alignment:
| Q |
20 |
aaaaagcaaatttggataatcattcggaatttgaatctgatgatgtcgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttc |
119 |
Q |
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| T |
43699048 |
aaaaagcgaatttggatgttcatttggaatttgaatctgatgatgttgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttc |
43698949 |
T |
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| Q |
120 |
aatttgttgggctatgtcatgggattgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcg |
210 |
Q |
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| T |
43698948 |
aatttgttgggctatgtcgtgggattgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgagtcatttggttacgtcggcg |
43698858 |
T |
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