View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_38 (Length: 429)

Name: NF10481A_low_38
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_38
NF10481A_low_38
[»] chr4 (1 HSPs)
chr4 (9-407)||(38712836-38713216)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 407
Target Start/End: Original strand, 38712836 - 38713216
Alignment:
Q  9 attatactcttcccaagaatttgaaggaagtattcagaaataggtaccaaacaaagcataaatccatataaaaaatgagaagttcagcgactaaaatcat 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  38712836 attatcctcttcccaagaatttgaaggaagtattcagaaataggcaccaaacaaagtataaatccatatcaaaaatgaaaagttcagcgactaaaatcat 38712935  T
Q  109 catcaacaatttttcacattgaaaaaatacttttaaaattgttcaaaaaacttgattaattgaagaacatatatataggtgcatctgaatttaatcattt 208  Q
    ||||||||         |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  38712936 catcaacat--------attgaaaaaatacttttaaaattgttcaaaaaacttcattaattgaagaacatatatataggtgaatctgaatttaatcattt 38713027  T
Q  209 ataagaaaataaagtaatccaaatccaacacaaaatgatcaaccagctgaaaggnnnnnnngaagtgctagaaattaaagaagactataactacatgaat 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||| || |  || ||       |||| ||||||||||||    
T  38713028 ataagagaataaagtaatccaaatccaacacaaaatgatcaaccagctgaaaggaaaaaaagaa-tgtt--aagtt-------actacaactacatgaat 38713117  T
Q  309 taatttgcaaagaccctttaaaattttggagttgataaggtccataatagaagttaagttactagtacctgaaggagggggtgagagggatgagaaggg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38713118 taatttgcaaagaccctttaaaattttggagttgataaggtccataatagaagttaagttactagtacctgaaggagggggtgagagggatgagaaggg 38713216  T

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