View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_384 (Length: 250)
Name: NF10481A_low_384
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_384 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32853660 - 32853424
Alignment:
| Q |
1 |
gatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaa |
100 |
Q |
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| T |
32853660 |
gatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaa |
32853561 |
T |
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| Q |
101 |
ccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853560 |
ccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
32853461 |
T |
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| Q |
201 |
tagtcaaggcaacaaacaattcattcatgatgtccat |
237 |
Q |
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| T |
32853460 |
tagtcaaggcaacaaacaattcattcatgatgtccat |
32853424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37176796 - 37176560
Alignment:
| Q |
1 |
gatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
37176796 |
gatgcaaataagttattctctactatgattaatgataaaaaatctggtgagatgtggtttttagatagtggttgtagcaatcatgtaacagggaatcaaa |
37176697 |
T |
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| Q |
101 |
ccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
200 |
Q |
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| T |
37176696 |
ccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
37176597 |
T |
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| Q |
201 |
tagtcaaggcaacaaacaattcattcatgatgtccat |
237 |
Q |
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| T |
37176596 |
tagtcaaggcaacaaacaattcattcatgatgtccat |
37176560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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