View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_388 (Length: 250)
Name: NF10481A_low_388
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_388 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 45082391 - 45082629
Alignment:
| Q |
4 |
cgacagagatgaaatatcgcaattacaacttcaaaaataacatgaaccaaaaa-gaagcaaatacctatctcttttttctttagttttctgtcaccttag |
102 |
Q |
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| T |
45082391 |
cgacagacatgaaatatcgcaattacaacttcaaaaataacatgaacaaaaaaagaagcaaatacctatctcttttttctttagttttttgtcaccttag |
45082490 |
T |
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| Q |
103 |
aataatcagcaaaagaggaacaacgtgacaacaacaaacaaacacaagaagaatattaagcattgttttattttctgttaatgaatttcgcacatctcaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45082491 |
aataatcagcaaaagaggaacaacgtgacaacaaca----aacacaagaagaatattaagcattgttttattctctgttaatgaatttcgcacatctcaa |
45082586 |
T |
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| Q |
203 |
cgactctcccatgtttcgtcaacaggttcttttctttcctctg |
245 |
Q |
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| T |
45082587 |
cgactctcccatgtttcgtcaacaggttcttttctttcctctg |
45082629 |
T |
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