View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_390 (Length: 250)
Name: NF10481A_low_390
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_390 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24122222 - 24122461
Alignment:
| Q |
1 |
tgactctcaaggtaacttcgtcaccttgatcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacctgagataagcaaatta |
100 |
Q |
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| T |
24122222 |
tgactctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacctgagataagcaaatta |
24122321 |
T |
|
| Q |
101 |
ggaatacatcattattaacttgtaaaatggttgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtctggtggttagaaattca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24122322 |
ggaatacatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtctggtggttagaaattca |
24122421 |
T |
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| Q |
201 |
cctcttaaaatgaataactgagataaatgagatgtctatg |
240 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
24122422 |
cctcttaaaatgaataactgagataagtgagatgtctatg |
24122461 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 1861486 - 1861430
Alignment:
| Q |
166 |
ttttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataactgag |
222 |
Q |
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|||||| ||||| |||||| |||| || |||||||||||||||||||||||| |||| |
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| T |
1861486 |
tttttttgtcaagtagtcttgtggctaaaaattcacctcttaaaatgaataagtgag |
1861430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 29484975 - 29484932
Alignment:
| Q |
174 |
tcaaatagtctggtggttagaaattcacctcttaaaatgaataa |
217 |
Q |
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| T |
29484975 |
tcaaatagtctagtggctagatattcacctcttaaaatgaataa |
29484932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 24284213 - 24284261
Alignment:
| Q |
169 |
tttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa |
217 |
Q |
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|||| |||||||| || |||| |||| |||||||||||||||||||||| |
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| T |
24284213 |
tttgttcaaatagcctagtggctagacattcacctcttaaaatgaataa |
24284261 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 2233224 - 2233170
Alignment:
| Q |
163 |
tcattttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa |
217 |
Q |
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|||||||||||||||||| | | |||||| ||||||| |||||||||||||||| |
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| T |
2233224 |
tcattttttggtcaaataatttattggttaaaaattcaactcttaaaatgaataa |
2233170 |
T |
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