View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_392 (Length: 250)
Name: NF10481A_low_392
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_392 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 29339445 - 29339233
Alignment:
| Q |
29 |
agtattccactctctctttccatatcatcaaaacatgaataaagaggcatgtactccaattatgctcacaatttgagggagaacaaggctcaagttactg |
128 |
Q |
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| T |
29339445 |
agtatccctctctctctttccatatcatcaaaacatgaataaagaagtatgtactccaattatgctcacaatttgagggagaacaaggctcaagttattg |
29339346 |
T |
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| Q |
129 |
gagctgtatcccaaagtgttgaagaggcatccctaatttatctgtcaaatattatcgtttaaaattgtaaaaaggtggagagtactttttggatactgat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339345 |
gagctgtatcccaaagtgttgaagaggcatccctaatttatctgtcaaatattatcgtttaaaattgtaaaaaggtggagagtactttttggatactgat |
29339246 |
T |
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| Q |
229 |
ctaggagtattat |
241 |
Q |
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||||||||||||| |
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| T |
29339245 |
ctaggagtattat |
29339233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 42 - 241
Target Start/End: Complemental strand, 29347248 - 29347048
Alignment:
| Q |
42 |
ctctttccatatcatcaaaacatgaataaagaggcatgt-actccaattatgctcacaatttgagggagaacaaggctcaagttactggagctgtatccc |
140 |
Q |
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|||||| |||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29347248 |
ctcttttcatatcctcaaaacatgaataaagagtattttgactccaattatgctcacaatttgagggagaacaaggctcaagttactggagctgtatccc |
29347149 |
T |
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| Q |
141 |
aaagtgttgaagaggcatccctaatttatctgtcaaatattatcgtttaaaattgtaaaaaggtgga-gagtactttttggatactgatctaggagtatt |
239 |
Q |
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|||||||| || |||||||| |||||||||||||||||| |||| ||||||||| |||||||| ||| | | ||||||||||||||||||||||| || |
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| T |
29347148 |
aaagtgtt-aataggcatccttaatttatctgtcaaataatatcttttaaaattttaaaaaggaggaggttttttttttggatactgatctaggagtgtt |
29347050 |
T |
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| Q |
240 |
at |
241 |
Q |
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|| |
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| T |
29347049 |
at |
29347048 |
T |
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