View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_393 (Length: 250)

Name: NF10481A_low_393
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_393
NF10481A_low_393
[»] chr1 (3 HSPs)
chr1 (8-149)||(24197649-24197789)
chr1 (177-244)||(24197467-24197534)
chr1 (8-59)||(17633331-17633382)
[»] chr6 (2 HSPs)
chr6 (17-155)||(4918881-4919023)
chr6 (13-74)||(10744197-10744258)
[»] chr3 (4 HSPs)
chr3 (17-69)||(38373546-38373598)
chr3 (17-58)||(49757685-49757726)
chr3 (23-71)||(3942072-3942120)
chr3 (18-60)||(39213540-39213582)
[»] chr2 (1 HSPs)
chr2 (17-59)||(33202447-33202489)
[»] chr8 (1 HSPs)
chr8 (80-151)||(8021336-8021408)
[»] chr7 (1 HSPs)
chr7 (13-66)||(7359806-7359859)
[»] chr5 (2 HSPs)
chr5 (23-59)||(18443872-18443908)
chr5 (15-59)||(37496042-37496086)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 24197789 - 24197649
Alignment:
Q  8 ttggagttattgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatggaacaaatatgtactcttttcaaaatatgttagtgg 107  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||||  ||| ||||| ||||||||||||||||||||||||  ||||||||||    
T  24197789 ttggtgttattgtttgtaattgaaatatatgacttcataagtcatatttaatacatgcggaatagaacaaatatgtactcttttcaaa--atgttagtgg 24197692  T
Q  108 tttgtgcatgtag-ttgtgattgtaatacactactccaaagtc 149  Q
    ||||||||||| | ||||||||||||| ||| ||||| |||||    
T  24197691 tttgtgcatgttgtttgtgattgtaattcacaactccgaagtc 24197649  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 24197534 - 24197467
Alignment:
Q  177 gcatgcattcaccaaggtttgataggtttctgaaatgattctccttgaaattgattcatggaaattgt 244  Q
    ||||| ||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  24197534 gcatggattaaccatggtttgatagatttgtgaaatgattctccttgaaattgattcatggaaattgt 24197467  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17633382 - 17633331
Alignment:
Q  8 ttggagttattgtttgtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||| ||| |||||||||||||||||| |||||| ||||||| |||||||||    
T  17633382 ttggtgttgttgtttgtgattgaaatacatgactccaaaagtaatatttaat 17633331  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 4919023 - 4918881
Alignment:
Q  17 ttgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatggaacaaatatgtactcttttcaaaatatgttagtggtttgtgcat 116  Q
    |||||| | ||||||||| |||| |||||||||||||||||||  ||||||||||  | | ||||||| | | |  || |||| | ||||||||||||||    
T  4919023 ttgtttctaattgaaatacatgatttcaaaagtcatatttaatacatgaggaatgagatagatatgtattatatgtaagatatatgagtggtttgtgcat 4918924  T
Q  117 gtag----ttgtgattgtaatacactactccaaagtcatattt 155  Q
     |||    ||||||||| |||||| ||||||||||||| ||||    
T  4918923 atagtagtttgtgattgaaatacattactccaaagtcagattt 4918881  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 10744197 - 10744258
Alignment:
Q  13 gttattgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatggaa 74  Q
    |||||||||||||||||||||  |||||| ||| |||||| ||||||| ||||| |||||||    
T  10744197 gttattgtttgtgattgaaatgcatgactccaagagtcatgtttaattcatgagaaatggaa 10744258  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38373598 - 38373546
Alignment:
Q  17 ttgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaa 69  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  38373598 ttgtttgtgattgaaatgtatgacttcaagagtcatgtttaattcatgaggaa 38373546  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 49757726 - 49757685
Alignment:
Q  17 ttgtttgtgattgaaatatatgacttcaaaagtcatatttaa 58  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  49757726 ttgtttgtgattgaaatacatgacttcagaagtcatatttaa 49757685  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 3942120 - 3942072
Alignment:
Q  23 gtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatg 71  Q
    |||||||||||| |||||||||||| |||||||||||  ||||||||||    
T  3942120 gtgattgaaatacatgacttcaaaaatcatatttaatacatgaggaatg 3942072  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 39213582 - 39213540
Alignment:
Q  18 tgtttgtgattgaaatatatgacttcaaaagtcatatttaatt 60  Q
    ||||||||||| |||||||||||||||||||| || |||||||    
T  39213582 tgtttgtgatttaaatatatgacttcaaaagtaatgtttaatt 39213540  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 33202447 - 33202489
Alignment:
Q  17 ttgtttgtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  33202447 ttgtttgtgattaaaataaatgacttcaaaagtcatatttaat 33202489  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 8021336 - 8021408
Alignment:
Q  80 atgtactcttttcaaaatatgttagtggtttgtgcatgtagtt-gtgattgtaatacactactccaaagtcat 151  Q
    ||||| ||||| | |||||| ||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||    
T  8021336 atgtattctttgccaaatatattagtggttagtgcatatagtttgtgattgaaatacattactccaaagtcat 8021408  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 7359806 - 7359859
Alignment:
Q  13 gttattgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgag 66  Q
    |||| ||||| |||| ||||||||||||||||| |||||| ||||||| |||||    
T  7359806 gttagtgtttttgatcgaaatatatgacttcaagagtcatgtttaattcatgag 7359859  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 18443908 - 18443872
Alignment:
Q  23 gtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  18443908 gtgattgatatacatgacttcaaaagtcatatttaat 18443872  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 37496042 - 37496086
Alignment:
Q  15 tattgtttgtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||| ||| |||||||||||||||||||||| | |||||||||||    
T  37496042 tattttttatgattgaaatatatgacttcaataatcatatttaat 37496086  T

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