View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_395 (Length: 250)
Name: NF10481A_low_395
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_395 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 34450758 - 34450525
Alignment:
| Q |
4 |
ggacatcatatgtcatggattcactctctatggagttaaatgcatcagatgaactataaaattcaccttatatatatccacaaaagaagtaacttttgca |
103 |
Q |
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| T |
34450758 |
ggacatgatatgtcatggattcactctctatggagttaaatgcatcagatgaactataaaattcaccttatatatatccacaaaagaattaacttttgca |
34450659 |
T |
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| Q |
104 |
aagaaaaccatgtatttatgactatgtcaattgtttgacttgtattttcaaaacacgattttctttaatagattccttaaacaattctcttaaggtactt |
203 |
Q |
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| T |
34450658 |
aagaaaaccatgtatttatgactatgtcaattgtttgacttgtattttcaaaacacgattttctttaatagattccttaaacaattctcttaagatactt |
34450559 |
T |
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| Q |
204 |
attagctagcgtatccctttcctgtaatcaagtataat |
241 |
Q |
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| T |
34450558 |
at----tagcgtatacctttcctgtaatcaagtgtaat |
34450525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 34449803 - 34449736
Alignment:
| Q |
11 |
atatgtcatggattcactctctatggagttaaatgcatcagatgaactataaaattcaccttatatat |
78 |
Q |
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| T |
34449803 |
atatgtcatagattcactatctacggagttaaatgcatcagatgaactataaaattcactgtatatat |
34449736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 8291155 - 8291097
Alignment:
| Q |
92 |
gtaacttttgcaaagaaaaccatgtatttatgactatgtcaattgtttgacttgtattt |
150 |
Q |
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| T |
8291155 |
gtaacttttgcatagaaaatgatgtaattatgactatgacaagtgtttgacttgtattt |
8291097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 36642750 - 36642826
Alignment:
| Q |
119 |
ttatgactatgtcaattgtttgacttgtattttcaaaacacgattttctttaatagattccttaaacaattctctta |
195 |
Q |
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| T |
36642750 |
ttatgactttatcaaatgtttgacttgtattttcaagacataatttccttttgtagataccttaaacaatgctctta |
36642826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 4552208 - 4552145
Alignment:
| Q |
134 |
ttgtttgacttgtattttcaaaacacgattttctttaatagattccttaaacaattctcttaag |
197 |
Q |
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| T |
4552208 |
ttgtttgacttgtattttcaaaacaattttatttttcgtagattccttaaacaatactcttaag |
4552145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 8713830 - 8713777
Alignment:
| Q |
135 |
tgtttgacttgtattttcaaaacacgattttctttaatagattccttaaacaat |
188 |
Q |
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| T |
8713830 |
tgtttgacttgtattttcaagacaaaattttttttaatggatttcttaaacaat |
8713777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 47595525 - 47595617
Alignment:
| Q |
97 |
ttttgcaaagaaaaccatgtatttatgactatgtcaattgtttgacttgtattttcaaaacacgattttctttaatagattccttaaacaatt |
189 |
Q |
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| T |
47595525 |
ttttgtaaagaaaattatgtatttataattatgaccaatgtttgacttatattttcaaaacacggattgtttttatggattacttaaacaatt |
47595617 |
T |
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