View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_396 (Length: 250)

Name: NF10481A_low_396
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_396
NF10481A_low_396
[»] chr5 (13 HSPs)
chr5 (118-239)||(38180888-38181009)
chr5 (118-239)||(38190122-38190243)
chr5 (118-239)||(38208112-38208233)
chr5 (118-239)||(38217347-38217468)
chr5 (118-239)||(38456248-38456369)
chr5 (142-239)||(26033227-26033324)
chr5 (143-239)||(38447447-38447543)
chr5 (14-61)||(38180761-38180808)
chr5 (14-61)||(38190323-38190370)
chr5 (14-61)||(38207985-38208032)
chr5 (14-61)||(38217548-38217595)
chr5 (14-61)||(38456121-38456168)
chr5 (14-61)||(26033448-26033495)
[»] chr4 (2 HSPs)
chr4 (152-214)||(53351367-53351429)
chr4 (25-60)||(53351852-53351887)
[»] chr1 (2 HSPs)
chr1 (152-239)||(38342739-38342826)
chr1 (152-239)||(38446932-38447019)
[»] chr6 (1 HSPs)
chr6 (161-240)||(4121643-4121722)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 38180888 - 38181009
Alignment:
Q  118 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  38180888 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc 38180987  T
Q  218 ttgtcacccttccccgacaaca 239  Q
    ||||||||||||||||||||||    
T  38180988 ttgtcacccttccccgacaaca 38181009  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 38190243 - 38190122
Alignment:
Q  118 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  38190243 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc 38190144  T
Q  218 ttgtcacccttccccgacaaca 239  Q
    ||||||||||||||||||||||    
T  38190143 ttgtcacccttccccgacaaca 38190122  T

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Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 38208112 - 38208233
Alignment:
Q  118 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  38208112 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc 38208211  T
Q  218 ttgtcacccttccccgacaaca 239  Q
    ||||||||||||||||||||||    
T  38208212 ttgtcacccttccccgacaaca 38208233  T

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Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 38217468 - 38217347
Alignment:
Q  118 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  38217468 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc 38217369  T
Q  218 ttgtcacccttccccgacaaca 239  Q
    ||||||||||||||||||||||    
T  38217368 ttgtcacccttccccgacaaca 38217347  T

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Target: chr5; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 38456248 - 38456369
Alignment:
Q  118 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  38456248 gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc 38456347  T
Q  218 ttgtcacccttccccgacaaca 239  Q
    ||||||||||||||||||||||    
T  38456348 ttgtcacccttccccgacaaca 38456369  T

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Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 26033324 - 26033227
Alignment:
Q  142 tcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaaca 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  26033324 tcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaaggcgtggcttgtcacccttccctgacaaca 26033227  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 38447447 - 38447543
Alignment:
Q  143 cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaaca 239  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||| |||||||    
T  38447447 cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaacataaaaagtgtggcttgtcacccttccctgacaaca 38447543  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 38180761 - 38180808
Alignment:
Q  14 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38180761 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 38180808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 38190370 - 38190323
Alignment:
Q  14 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190370 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 38190323  T

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Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 38207985 - 38208032
Alignment:
Q  14 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38207985 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 38208032  T

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Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 38217595 - 38217548
Alignment:
Q  14 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217595 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 38217548  T

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Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 38456121 - 38456168
Alignment:
Q  14 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456121 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 38456168  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 26033495 - 26033448
Alignment:
Q  14 tatataaagtatggtgaattcaaatggtctaagctggctcatgaggta 61  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||    
T  26033495 tataaaaagtatggtgaattcaaatggtctaagctggctgaggaggta 26033448  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 53351429 - 53351367
Alignment:
Q  152 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgt 214  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  53351429 ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt 53351367  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 53351887 - 53351852
Alignment:
Q  25 tggtgaattcaaatggtctaagctggctcatgaggt 60  Q
    |||||||||||||||||||||||||||||| |||||    
T  53351887 tggtgaattcaaatggtctaagctggctcaagaggt 53351852  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 38342739 - 38342826
Alignment:
Q  152 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaaca 239  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||| | |||  | | |||||||||||||||| |||||||    
T  38342739 ggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattgcttgtcacccttccctgacaaca 38342826  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 38446932 - 38447019
Alignment:
Q  152 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaaca 239  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||| | |||  | | |||||||||||||||| |||||||    
T  38446932 ggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattgcttgtcacccttccctgacaaca 38447019  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 4121643 - 4121722
Alignment:
Q  161 gataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaacac 240  Q
    |||||||  |||||||||||||||||||| ||||||||||||  | ||||| ||||| | ||||||| |||  |||||||    
T  4121643 gataatgctatcaagaacttttggaatgcaagaaaaagaaaatataaaaagagtggcctatcaccctaccctaacaacac 4121722  T

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