View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_399 (Length: 250)

Name: NF10481A_low_399
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_399
NF10481A_low_399
[»] chr1 (4 HSPs)
chr1 (1-244)||(49400107-49400350)
chr1 (139-244)||(49399551-49399656)
chr1 (149-244)||(27890573-27890668)
chr1 (121-244)||(27891227-27891350)
[»] chr4 (9 HSPs)
chr4 (1-243)||(52237641-52237877)
chr4 (141-244)||(52238270-52238373)
chr4 (149-244)||(55633559-55633654)
chr4 (139-244)||(53327461-53327566)
chr4 (139-223)||(48957414-48957498)
chr4 (185-244)||(5469968-5470027)
chr4 (205-244)||(21857562-21857601)
chr4 (205-244)||(21913425-21913464)
chr4 (185-244)||(36386039-36386098)
[»] chr2 (5 HSPs)
chr2 (29-244)||(20267170-20267385)
chr2 (29-244)||(20268838-20269053)
chr2 (75-244)||(33361052-33361222)
chr2 (150-238)||(41993318-41993406)
chr2 (29-65)||(33361204-33361240)
[»] chr7 (9 HSPs)
chr7 (90-244)||(45431064-45431218)
chr7 (139-244)||(32249350-32249455)
chr7 (120-243)||(45431753-45431876)
chr7 (162-239)||(22492483-22492560)
chr7 (185-244)||(23752803-23752862)
chr7 (185-244)||(43844799-43844858)
chr7 (185-244)||(48204152-48204211)
chr7 (149-223)||(32492585-32492659)
chr7 (120-173)||(42404633-42404686)
[»] chr3 (11 HSPs)
chr3 (62-244)||(44321436-44321620)
chr3 (85-244)||(23514390-23514549)
chr3 (149-244)||(16436529-16436624)
chr3 (149-243)||(54706928-54707020)
chr3 (139-244)||(23513693-23513798)
chr3 (185-244)||(8923631-8923690)
chr3 (185-244)||(41326544-41326603)
chr3 (185-244)||(8922889-8922948)
chr3 (185-244)||(41325827-41325886)
chr3 (182-244)||(40810287-40810349)
chr3 (185-225)||(50107592-50107632)
[»] chr8 (3 HSPs)
chr8 (100-240)||(17626268-17626408)
chr8 (149-244)||(17625639-17625734)
chr8 (185-244)||(38443039-38443098)
[»] chr5 (2 HSPs)
chr5 (106-240)||(129280-129414)
chr5 (149-244)||(128666-128761)
[»] chr6 (2 HSPs)
chr6 (185-244)||(28548400-28548459)
chr6 (185-244)||(34260121-34260180)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 49400107 - 49400350
Alignment:
Q  1 taccagagatccaccgccgaaaatgaagcttcttctattttgaaatatgcatcagttatggaaaatatacagaaaggcaacagatctggaaaaaatacag 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49400107 taccagagatccaccgccgaaaatgaagcttcttatattttgaaatatgcatcagttatggaaaatatacagagaggcaacagatctggaaaaaatacag 49400206  T
Q  101 agatcgtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatga 200  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  49400207 aggtcgtgtttctagaattaatcacatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaacatgtgtcacacatgcatga 49400306  T
Q  201 aggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49400307 aggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 49400350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 49399656 - 49399551
Alignment:
Q  139 tatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagca 238  Q
    ||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  49399656 tatctttccctttttaatttcaaccattggatattcttttaacacgtgtcacacatccatcaaggtaaatggggtaaattgagcaaaggcaaatggagca 49399557  T
Q  239 aagatg 244  Q
    ||||||    
T  49399556 aagatg 49399551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 27890668 - 27890573
Alignment:
Q  149 tttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||||| |||| | ||||   |  |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  27890668 tttttaatttcaaccgtttgatactattttgccacatgtcacacatccatgatggtaaataggataaattgagcaaaggcaaatggagcaaagatg 27890573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 244
Target Start/End: Original strand, 27891227 - 27891350
Alignment:
Q  121 atcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattga 220  Q
    |||| ||| ||||||||||||  || |  |||||||||||| ||||||||| | ||||   |  ||||| |||||||||  |||||||||||||||||||    
T  27891227 atcacatgtgtgtttgtttattattgcccttttaatttcaatcgttggatactattttgccacatgtcagacatccatgttggtaaatgggataaattga 27891326  T
Q  221 gcaaaggcaaatggagcaaagatg 244  Q
    | ||||  ||||||||||||||||    
T  27891327 gtaaagataaatggagcaaagatg 27891350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 52237877 - 52237641
Alignment:
Q  1 taccagagatccaccgccgaaaatgaagcttcttctattttgaaatatgcatcagttatggaaaa-tatacagaaaggcaacagatctggaaaaaataca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||    |||||||||||||||    
T  52237877 taccagagatccaccgccgaaaatgaagcttcttctattttgaaatatgcatcagttatggaaaaatatacaga--ggcaa----tctggaaaaaataca 52237784  T
Q  100 gagatcgtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatg 199  Q
    ||||| ||||||||| || |||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  52237783 gagattgtgtttctaaaagtaatcacatgtgtgtttgtttatctttccttttt-aatttcaactgttggatattcttttaacatgtgtcacacatccatg 52237685  T
Q  200 aaggtaaatgggataaattgagcaaaggcaaatggagcaaagat 243  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  52237684 aaggtaaatggggtaaattgagcaaaggcaaatggagcaaagat 52237641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 52238270 - 52238373
Alignment:
Q  141 tctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaa 240  Q
    ||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  52238270 tctttccctttttaatttcaaccattggatattcttttaacacgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatgaagcaaa 52238369  T
Q  241 gatg 244  Q
    ||||    
T  52238370 gatg 52238373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 55633654 - 55633559
Alignment:
Q  149 tttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||||| |||| | ||||   || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  55633654 tttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatg 55633559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 53327566 - 53327461
Alignment:
Q  139 tatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagca 238  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |  |||||||||||| |||||||||||| |||||||  |||| |   ||||||||||    
T  53327566 tatctttccctttttaatttcaaccattggatattcttttaacaaatgtcacacatccgtgaaggtaaatgagataaatgaagcatatctaaatggagca 53327467  T
Q  239 aagatg 244  Q
    ||||||    
T  53327466 aagatg 53327461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 48957414 - 48957498
Alignment:
Q  139 tatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagca 223  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |  |||| ||||||| |||||||||||||| ||||| |||||    
T  48957414 tatctttccctttttaatttcaaccattggatattcttttaacacatgtcgcacatccgtgaaggtaaatgggttaaatggagca 48957498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 5469968 - 5470027
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||| | ||||||||||||||||||||||||   ||||||||||||||||    
T  5469968 tgtcacacatccataatggtaaatgggataaattgagcaaacttaaatggagcaaagatg 5470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 21857562 - 21857601
Alignment:
Q  205 aaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  21857562 aaatgggataaattgaggaaaggtaaatggagcaaagatg 21857601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 21913425 - 21913464
Alignment:
Q  205 aaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  21913425 aaatgggataaattgaggaaaggtaaatggagcaaagatg 21913464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 36386039 - 36386098
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||||||||    ||||||| ||||||||||||||  ||||||||||||||||    
T  36386039 tgtcacacatccatgactagaaatggggtaaattgagcaaagtgaaatggagcaaagatg 36386098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 20267385 - 20267170
Alignment:
Q  29 cttcttctattttgaaatatgcatcagttatggaaaat-atacagaaaggcaacagatctggaaaaaatacagagatcgtgtttctagaattaatcatat 127  Q
    ||||||||||||||||||| ||||||||| |||||||  ||||||| || |||||| ||||||||||  | |||||| ||||||||| ||  ||||||||    
T  20267385 cttcttctattttgaaataggcatcagttctggaaaaagatacagagagccaacagttctggaaaaag-atagagattgtgtttctaaaagcaatcatat 20267287  T
Q  128 gcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagg 227  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||    
T  20267286 gtgtgtttgtttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagataaatgagataaattgagcaaagg 20267187  T
Q  228 caaatggagcaaagatg 244  Q
     ||||||||||||||||    
T  20267186 taaatggagcaaagatg 20267170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 20268838 - 20269053
Alignment:
Q  29 cttcttctattttgaaatatgcatcagttatggaaaat-atacagaaaggcaacagatctggaaaaaatacagagatcgtgtttctagaattaatcatat 127  Q
    ||||||||||||||||||| ||||||||| |||||||  ||||||| || |||||| ||||||||||  | |||||| ||||||||| ||  ||||||||    
T  20268838 cttcttctattttgaaataggcatcagttctggaaaaagatacagagagccaacagttctggaaaaag-atagagattgtgtttctaaaagcaatcatat 20268936  T
Q  128 gcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagg 227  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||    
T  20268937 gtgtgtttgtttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagataaatgagataaattgagcaaagg 20269036  T
Q  228 caaatggagcaaagatg 244  Q
     ||||||||||||||||    
T  20269037 taaatggagcaaagatg 20269053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 33361222 - 33361052
Alignment:
Q  75 aggcaacagatctggaaaaa-atacagagatcgtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatatt 173  Q
    ||||| ||| |||||||||| ||||| |||| ||||||||| ||  ||||  ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  33361222 aggcatcagttctggaaaaagatacaaagattgtgtttctaaaaccaatcgcatgtgtgtttgtttatctttccctttttaatttcaaccgttggatatt 33361123  T
Q  174 cttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  33361122 cttttaacatgtgtcacacatccatgaaggtaaatggtataaattgagcaaaggtaaatggagcaaagatg 33361052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 41993318 - 41993406
Alignment:
Q  150 ttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagca 238  Q
    ||||||| |||||||||||||| | ||||   |  |||||||||||||| |||||||||||| ||||| |||  |||| ||||||||||    
T  41993318 ttttaatgtcaaccgttggatactattttgtcacatgtcacacatccataaaggtaaatggggtaaatggagttaaggtaaatggagca 41993406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 33361240 - 33361204
Alignment:
Q  29 cttcttctattttgaaatatgcatcagttatggaaaa 65  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  33361240 cttcttctattttgaaataggcatcagttctggaaaa 33361204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 45431218 - 45431064
Alignment:
Q  90 aaaaaatacagagatcgtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtca 189  Q
    |||| |||| ||||| ||||||||| ||  ||||| ||| ||||||||||||  || | ||||| ||||||||||||||||||| |||||| | ||||||    
T  45431218 aaaagatactgagattgtgtttctaaaagcaatcacatgggtgtttgtttattgttgccttttttatttcaaccgttggatattattttaacacgtgtca 45431119  T
Q  190 cacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  45431118 cacatccatgatggtaaatgggataaattgagcaaagacaaatggagcaaagatg 45431064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 32249455 - 32249350
Alignment:
Q  139 tatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagca 238  Q
    ||||||| | ||||||||||||||| |||||||||||||||| | |||||||||||| ||||| | ||||||| |||||||| |||||||||||||| ||    
T  32249455 tatctttacctttttaatttcaaccattggatattcttttaacaagtgtcacacatctatgaaaggaaatggggtaaattgaacaaaggcaaatggaaca 32249356  T
Q  239 aagatg 244  Q
    ||||||    
T  32249355 aagatg 32249350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 45431753 - 45431876
Alignment:
Q  120 aatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattg 219  Q
    ||||| ||| ||||||||||||  || | ||||| ||||| ||| ||||||||| |||||| | || |||||||||||||| |||||||| | ||||| |    
T  45431753 aatcacatgtgtgtttgtttattgttgccttttttatttcgaccattggatattattttaacacgtatcacacatccatgatggtaaatgagttaaatgg 45431852  T
Q  220 agcaaaggcaaatggagcaaagat 243  Q
    ||||||||||||||||||||||||    
T  45431853 agcaaaggcaaatggagcaaagat 45431876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 22492483 - 22492560
Alignment:
Q  162 ccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaa 239  Q
    |||||||||||| |||||  | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  22492483 ccgttggatattattttagcacgtgtcacacatccatgatggtaaatgggataaatggagcaaaggcaaatggagcaa 22492560  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 23752803 - 23752862
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||    
T  23752803 tgtcacacatccatgatggtaaatgggataaattgagcaaaggtaaaagaagcaaagatg 23752862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 43844858 - 43844799
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||    |||||||| ||||||||||||||  ||||||||||||||||    
T  43844858 tgtcacacatccatgtctttaaatggggtaaattgagcaaagtgaaatggagcaaagatg 43844799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 48204211 - 48204152
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||| |||||||||| ||||||| |||||||| |||||||   ||||||||||||||||    
T  48204211 tgtcatacatccatgatggtaaataggataaatggagcaaacttaaatggagcaaagatg 48204152  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 32492659 - 32492585
Alignment:
Q  149 tttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagca 223  Q
    ||||||| ||||||||||||||||| ||||   |  |||||||||||||| ||||| |||||| ||||| |||||    
T  32492659 tttttaaattcaaccgttggatattattttgccacatgtcacacatccataaaggtcaatggggtaaatggagca 32492585  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 42404686 - 42404633
Alignment:
Q  120 aatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatatt 173  Q
    ||||| ||| |||||| ||||| ||||| |||||||||||| ||||||||||||    
T  42404686 aatcacatgtgtgtttctttatttttccctttttaatttcagccgttggatatt 42404633  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 44321436 - 44321620
Alignment:
Q  62 aaaatatacagaaaggcaacagatctggaaaaaata--cagagatc-gtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaattt 158  Q
    |||| ||||||| ||||||||  ||||||||||| |  |||||||  ||||||||| ||  ||| | ||| |||||||||||||||| | ||||||||||    
T  44321436 aaaagatacagagaggcaacacttctggaaaaaagatccagagatttgtgtttctaaaagcaatgacatgtgtgtttgtttatcttttcctttttaattt 44321535  T
Q  159 caaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||| ||| |||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  44321536 caaccattgaatattcttttaacacgtgtcacacatcaatgaaggtaaatggg-taaattgagcaaaagcaaatggagcaaagatg 44321620  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 244
Target Start/End: Original strand, 23514390 - 23514549
Alignment:
Q  85 tctggaaaaaatacagagatcgtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatg 184  Q
    ||||||||||||| ||||||  |||||||| ||  ||||| ||| ||||||||||||  || | ||||| |||||||||||| |||||| ||||   |      
T  23514390 tctggaaaaaatatagagattttgtttctaaaagcaatcacatgtgtgtttgtttattgttgccttttttatttcaaccgttagatatttttttgccaca 23514489  T
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  23514490 tgtcacacatccatgatagtaaatggggtaaattgagcaaaggcaaatggagcaaagatg 23514549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 16436624 - 16436529
Alignment:
Q  149 tttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||||| |||| | ||||   || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  16436624 tttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatg 16436529  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 54707020 - 54706928
Alignment:
Q  149 tttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagat 243  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||  ||||||||||||||| ||  ||| |||||||||| ||||||    
T  54707020 tttttaatttcaaccgttggatattattttgacatgtgtcacacatccatgatcgtaaatgggataaatgga--aaatgcaaatggagtaaagat 54706928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 23513798 - 23513693
Alignment:
Q  139 tatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagca 238  Q
    ||||| ||| ||||||||||||||| || ||||||| ||| | | ||||||  ||||||||| | |||||||||||||||||||||||  ||||||||||    
T  23513798 tatctctccctttttaatttcaaccattagatattcctttgacacgtgtcatgcatccatgatgataaatgggataaattgagcaaagataaatggagca 23513699  T
Q  239 aagatg 244  Q
    ||||||    
T  23513698 aagatg 23513693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 8923631 - 8923690
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||| |||||||||| ||||| |||||||  |||||||||||||||||    
T  8923631 tgtcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagcaaagatg 8923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 41326544 - 41326603
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||| ||||||| || ||||| |||||||  |||||||||||||||||    
T  41326544 tgtcacacatccatgatggtaaattgggtaaatggagcaaacccaaatggagcaaagatg 41326603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 8922948 - 8922889
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||| | |||||||| |||||||||||||   |||||||| |||||||    
T  8922948 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatg 8922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 41325886 - 41325827
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||| | |||||||| |||||||||||||   |||||||| |||||||    
T  41325886 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatg 41325827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 40810287 - 40810349
Alignment:
Q  182 atgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||||||    ||||||||||||||||| |||   ||||||||||||||||    
T  40810287 atgtgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggagcaaagatg 40810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 50107632 - 50107592
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaa 225  Q
    |||||||||||||||| | |||||||| |||||||||||||    
T  50107632 tgtcacacatccatgatgataaatggggtaaattgagcaaa 50107592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 240
Target Start/End: Original strand, 17626268 - 17626408
Alignment:
Q  100 gagatcgtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatg 199  Q
    ||||| ||||||||| ||  ||||| ||| ||||||||||||  ||   ||||| ||||||||||||||||||| || ||  | ||||||||||||||||    
T  17626268 gagattgtgtttctaaaagcaatcacatgtgtgtttgtttattgttgtcttttttatttcaaccgttggatattattataccacgtgtcacacatccatg 17626367  T
Q  200 aaggtaaatgggataaattgagcaaaggcaaatggagcaaa 240  Q
    | |||||||||| ||||| | |||||| |||||||||||||    
T  17626368 atggtaaatggggtaaatggtgcaaagacaaatggagcaaa 17626408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 17625734 - 17625639
Alignment:
Q  149 tttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||||||  |||||||||||||| | | ||||| |||||||||||||||||||||| ||||| | ||||    ||||||||||||||||    
T  17625734 tttttaatttcaactattggatattcttttgacacgtgtcgcacatccatgaaggtaaatggggtaaatggtgcaagcctaaatggagcaaagatg 17625639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 38443098 - 38443039
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||||| |||||||||| ||||| ||||| |   ||||||||||||||||    
T  38443098 tgtcacacatccatgatggtaaatggggtaaatggagcagacttaaatggagcaaagatg 38443039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 129280 - 129414
Alignment:
Q  106 gtgtttctagaattaatcatatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggta 205  Q
    ||||||||| ||  ||||| ||| ||||||||||||  ||   ||||| |||||||||||||||||||  | ||  | ||||||||||||||||| | ||    
T  129280 gtgtttctaaaagcaatcacatgtgtgtttgtttattgttgtcttttttatttcaaccgttggatattagtatatcacgtgtcacacatccatgatgata 129379  T
Q  206 aatgggataaattgagcaaaggcaaatggagcaaa 240  Q
    |||| | ||||| | |||||| |||||||||||||    
T  129380 aatgaggtaaatggtgcaaagacaaatggagcaaa 129414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 128761 - 128666
Alignment:
Q  149 tttttaatttcaaccgttggatattcttttaatatgtgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||| |||||||||| || ||||||||||| | | ||||| |||||| |||||||||||||| |||||| | ||||    ||||||||||||||||    
T  128761 ttttaaatttcaaccattcgatattcttttgacacgtgtcgcacatctatgaaggtaaatggaataaatggtgcaagcctaaatggagcaaagatg 128666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 28548400 - 28548459
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    |||||||||||||| | | |||||| ||||||||||||||| | |||||||| |||||||    
T  28548400 tgtcacacatccataatgataaatgagataaattgagcaaaagtaaatggagtaaagatg 28548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 34260180 - 34260121
Alignment:
Q  185 tgtcacacatccatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatg 244  Q
    ||||||||||||||||    ||||||| ||||||||| ||||| ||||||||||||||||    
T  34260180 tgtcacacatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 34260121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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