View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_406 (Length: 249)
Name: NF10481A_low_406
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_406 |
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| [»] scaffold1079 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 18347747 - 18347978
Alignment:
| Q |
13 |
aatcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagagg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18347747 |
aatcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagagg |
18347846 |
T |
|
| Q |
113 |
tggaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcccattcttctaccctttattgggagtcga |
212 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18347847 |
tagaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcga |
18347946 |
T |
|
| Q |
213 |
tgactattcatagctattaccttaacaccaaa |
244 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
18347947 |
tgactattcatagctattaccttgacaccaaa |
18347978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 16899232 - 16899463
Alignment:
| Q |
13 |
aatcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagagg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16899232 |
aatcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagagg |
16899331 |
T |
|
| Q |
113 |
tggaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcccattcttctaccctttattgggagtcga |
212 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
16899332 |
tagaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccatttattgggagtcga |
16899431 |
T |
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| Q |
213 |
tgactattcatagctattaccttaacaccaaa |
244 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
16899432 |
tgactattcatagctattaccttgacaccaaa |
16899463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 13236744 - 13236513
Alignment:
| Q |
13 |
aatcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagagg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13236744 |
aatcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagagg |
13236645 |
T |
|
| Q |
113 |
tggaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcccattcttctaccctttattgggagtcga |
212 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13236644 |
tagaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcga |
13236545 |
T |
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| Q |
213 |
tgactattcatagctattaccttaacaccaaa |
244 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
13236544 |
tgactattcatagctattaccttgacaccaaa |
13236513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 254 - 470
Alignment:
| Q |
30 |
tgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttc----taagaggtggaatagaataa |
125 |
Q |
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|||| |||| |||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
254 |
tgcgtgtgcccggggtagaagttttgtataaatgtatcgccatgctattaagt--attttgatttaagttcttttcgttgtaagaggtggaatagaataa |
351 |
T |
|
| Q |
126 |
cccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcccattcttctaccctttattgggagtcgatgactattcatag |
225 |
Q |
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|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
352 |
cccggttgaagcgtaatgatcatacgcctgtaatgcattgtatgtcccataataggtcccattcttctaccctttcgggggagtcgatgactattcatag |
451 |
T |
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| Q |
226 |
ctattaccttaacaccaaa |
244 |
Q |
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|||||||||| |||||||| |
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| T |
452 |
ctattaccttgacaccaaa |
470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 198128 - 197996
Alignment:
| Q |
112 |
gtggaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcccattcttctaccctttattgggagtcg |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||| |||| ||||||||| ||||||||||| ||| || ||||| |
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| T |
198128 |
gtggaatagaataacccggttgaagggtaatgatcatacgtctgtaatgcattgtatggcccagaataggtcctattcttctaccttttccaggtagtcg |
198029 |
T |
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| Q |
212 |
atgactattcatagctattaccttaacaccaaa |
244 |
Q |
| |
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||| ||||||| ||||| |||||||||||||| |
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| T |
198028 |
atggctattcacagctaccaccttaacaccaaa |
197996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 256562 - 256437
Alignment:
| Q |
112 |
gtggaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcccattcttctaccctttattgggagtcg |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||| | || | |||| ||||||||| ||||||||||| ||| || ||||| |
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| T |
256562 |
gtggaatagaataacccggttgaagggtaatgatcatacgtctgtaatgcattgtacggcccagaataggtcctattcttctaccttttccaggtagtcg |
256463 |
T |
|
| Q |
212 |
atgactattcatagctattaccttaa |
237 |
Q |
| |
|
||| ||||||| ||||| ||||||| |
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| T |
256462 |
atggctattcacagctaccaccttaa |
256437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 10403965 - 10404018
Alignment:
| Q |
191 |
tctaccctttattgggagtcgatgactattcatagctattaccttaacaccaaa |
244 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10403965 |
tctaccctttattgggagtcgatgactattcatagctattaccttgacaccaaa |
10404018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 42203482 - 42203424
Alignment:
| Q |
186 |
attcttctaccctttattgggagtcgatgactattcatagctattaccttaacaccaaa |
244 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
42203482 |
attcttttatcctttattgggagtcgatgactattcatagctattaccttgacatcaaa |
42203424 |
T |
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Back To:
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