View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_409 (Length: 249)
Name: NF10481A_low_409
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_409 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 23377998 - 23378239
Alignment:
| Q |
8 |
atgagatggaaatcattctacaatcattatgaagtaataaaaaataaagaaggttggggatgagagttttgtcgaatcaagtctttcattataaccaaga |
107 |
Q |
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| T |
23377998 |
atgagatcaaaatcattctacaatcattatgaagtaataaaa-ataaagaaggttggggatgagagttttgtcgaatcaagtctgtcattataaccaaga |
23378096 |
T |
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| Q |
108 |
gtagcaagacattaagcacattgattgacttctcaatgaacat-aaacatctaacaatccaattatgttcacccataagagtcaccaaatcctcatgcac |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23378097 |
gtaacaagacattaagcacattgattgacttctcaatgaatatgtttgatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcac |
23378196 |
T |
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| Q |
207 |
attttttcagtcctcactcttaaatcaccttaaaaccctaaat |
249 |
Q |
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| T |
23378197 |
attttttcagtcctcgctcttaaatcacctcaaaaccctaaat |
23378239 |
T |
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