View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_415 (Length: 248)

Name: NF10481A_low_415
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_415
NF10481A_low_415
[»] chr4 (4 HSPs)
chr4 (136-177)||(45088872-45088913)
chr4 (196-246)||(44668633-44668683)
chr4 (196-246)||(44687909-44687959)
chr4 (217-246)||(45095432-45095461)
[»] chr1 (4 HSPs)
chr1 (213-246)||(43986172-43986205)
chr1 (215-246)||(43983365-43983396)
chr1 (199-246)||(44004750-44004797)
chr1 (208-246)||(19567332-19567370)
[»] chr8 (1 HSPs)
chr8 (1-35)||(42694632-42694666)
[»] chr7 (1 HSPs)
chr7 (213-246)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (200-245)||(24002368-24002413)


Alignment Details
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 45088872 - 45088913
Alignment:
Q  136 tctcagcagaaggacaccgttttctgaaatgaacaaggcatc 177  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  45088872 tctcagcagaagaacaccgttttcagaaatgaacaaggcatc 45088913  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 44668633 - 44668683
Alignment:
Q  196 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 246  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44668633 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44668683  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 44687909 - 44687959
Alignment:
Q  196 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 246  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44687909 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44687959  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 246
Target Start/End: Original strand, 45095432 - 45095461
Alignment:
Q  217 tttagtccatgactcaacaactccatactc 246  Q
    ||||||||||||||||||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactc 45095461  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 43986172 - 43986205
Alignment:
Q  213 tcaatttagtccatgactcaacaactccatactc 246  Q
    ||||||||||||||||||||||||||||||||||    
T  43986172 tcaatttagtccatgactcaacaactccatactc 43986205  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 43983365 - 43983396
Alignment:
Q  215 aatttagtccatgactcaacaactccatactc 246  Q
    ||||||||||||||||||||||||||||||||    
T  43983365 aatttagtccatgactcaacaactccatactc 43983396  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 44004750 - 44004797
Alignment:
Q  199 ctgagggaagattgtcaatttagtccatgactcaacaactccatactc 246  Q
    |||||||| |||  |||||||||||||||||||| |||||||||||||    
T  44004750 ctgagggatgatcatcaatttagtccatgactcagcaactccatactc 44004797  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 19567332 - 19567370
Alignment:
Q  208 gattgtcaatttagtccatgactcaacaactccatactc 246  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  19567332 gattgtcaatatagtccatgactcagcaactccatactc 19567370  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42694666 - 42694632
Alignment:
Q  1 ttaccattgcggcgataccagactctcatggtaaa 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  42694666 ttaccattgcggtgataccagactctcatggtaaa 42694632  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 41688793 - 41688826
Alignment:
Q  213 tcaatttagtccatgactcaacaactccatactc 246  Q
    ||||||||||||||||||||||||||| ||||||    
T  41688793 tcaatttagtccatgactcaacaactctatactc 41688826  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 24002413 - 24002368
Alignment:
Q  200 tgagggaagattgtcaatttagtccatgactcaacaactccatact 245  Q
    ||||||| |||| ||||||| |||||||||||||||||||| ||||    
T  24002413 tgagggatgattttcaattttgtccatgactcaacaactccgtact 24002368  T

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