View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_416 (Length: 248)
Name: NF10481A_low_416
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_416 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 37766010 - 37766244
Alignment:
| Q |
8 |
gctggtcggacgagatttcagcagggtcctaacaaccatgaggggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa |
107 |
Q |
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| T |
37766010 |
gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa |
37766109 |
T |
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| Q |
108 |
gccgatgcttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctacct |
207 |
Q |
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| T |
37766110 |
gctgatgtttatagctacggaatgatgcttttcgaggttgtatcgggtaggaggaactccgatccatcagaagatggtcaagttactttctttcctacct |
37766209 |
T |
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| Q |
208 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
242 |
Q |
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| T |
37766210 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
37766244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 37799729 - 37799519
Alignment:
| Q |
15 |
ggacgagatttcagcagggtcctaacaaccatgaggggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatg |
114 |
Q |
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| T |
37799729 |
ggacgagatttcagaagaatccttacaaacatggaaggatcaagaggctatctttccccagagtggatatctagggctgctatcacagccaaatctgatg |
37799630 |
T |
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| Q |
115 |
cttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctaccttagctgc |
214 |
Q |
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| T |
37799629 |
tttacagttatggaatgatgctttttgaggttgtatcaggtaaaaggaattctgatccatctgcagatgaccaaaatactttctttccaaccttggctgc |
37799530 |
T |
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| Q |
215 |
aaaagtagtta |
225 |
Q |
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| T |
37799529 |
tacagtagtta |
37799519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 16214 - 16407
Alignment:
| Q |
24 |
ttcagcagggtcctaacaaccatgaggggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatgcttatagct |
123 |
Q |
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| T |
16214 |
ttcagccgggtcctcactaccatgagaggaacaagaggctatctagctccagagtggatttcaggagttgctataaccgctaaagccgatgtttacagct |
16313 |
T |
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| Q |
124 |
acggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctaccttagctgcaaa |
217 |
Q |
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| T |
16314 |
acggaatgatgcttttcgagctagtgtcaggtagaagaaactccgatccttctgaagatggccatgttagattctttcctaccttagctgcaaa |
16407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 217
Target Start/End: Original strand, 38388077 - 38388258
Alignment:
| Q |
43 |
ccatgaggggaacaagaggctaccttgctccgga---gtggatttctggcgtggctattacagccaaagccgatgcttatagctacggaatgatgctttt |
139 |
Q |
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| T |
38388077 |
ccatgagaggaacaagaggctatctagctccagatgagtggatttcgggagtttctataaccgctaaagccgatgtttacaactacagaatgatgctttt |
38388176 |
T |
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| Q |
140 |
cgaggttgtatcaggtaggaggaactccgatccttcag----aagatggtcaagttactttctttcctaccttagctgcaaa |
217 |
Q |
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| T |
38388177 |
cgagctcgtgtcaggaagaagaaactctgatccttccgaattaagatggccatgttagattctttcctactttggctgcaaa |
38388258 |
T |
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