View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_417 (Length: 248)
Name: NF10481A_low_417
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_417 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 10576553 - 10576323
Alignment:
| Q |
17 |
acatcaaagggtccccagaggctaactaactctcaattgagaggctttgtggcttgaattgggtgcatatatgaggatgcatgaattgtgacaagaactc |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10576553 |
acatcaaagggtccc-agaggctaactaactctcaattgagaggctttgtgacttgaattgggtgcatatatgaggatgcatgaattgtgacaagaactc |
10576455 |
T |
|
| Q |
117 |
ttttctcctctcctctgttattccttttccttcaaaattttgaacattctgcaccttttgcgcattttgtatactaagatcttctgttattcttttggtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10576454 |
ttttctcctctcctctgttattccttttccttcaaaattctgaacattctgcaccttttgcgcattttgtacactaagatcttctgttattcctttggtg |
10576355 |
T |
|
| Q |
217 |
ctttcattttgtcataagaggttgaacattgg |
248 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
|
|
| T |
10576354 |
ctttcattttgtcagaagaggttgaacattgg |
10576323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University