View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_42 (Length: 423)
Name: NF10481A_low_42
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 3659745 - 3659355
Alignment:
| Q |
1 |
gttgtagatgttgtggactcttatcagggtgttgaagatgacgaggaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagata |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659745 |
gttgtagatgttgtggactcttctcagggtgttgaagatgacgaggaagtgctggtgggggacagtggaggatcaacacgtagtagcgatgacggagata |
3659646 |
T |
|
| Q |
101 |
tagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgt |
200 |
Q |
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| T |
3659645 |
tagtg---------------gcacaccaagagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgt |
3659561 |
T |
|
| Q |
201 |
gaaaattttgacgtgaaatgtcgttacattatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattgg |
300 |
Q |
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| T |
3659560 |
gaaaattttgacgtgaaatgtcattacattatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattggattctaggacaatttgattgg |
3659461 |
T |
|
| Q |
301 |
acttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatatgattcataaatggatttgttatgttccactttaattggcatttagat |
400 |
Q |
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| T |
3659460 |
acttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatttggtt-ataaatggatttgttatgttccacttcaattggaatttagat |
3659362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 46 - 390
Target Start/End: Complemental strand, 3653449 - 3653106
Alignment:
| Q |
46 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
145 |
Q |
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| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
|
| Q |
146 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
245 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3653349 |
ctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattatattcatgtaaggt |
3653250 |
T |
|
| Q |
246 |
tttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaat |
345 |
Q |
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| T |
3653249 |
tttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatctgcgtgtctaat |
3653152 |
T |
|
| Q |
346 |
tggcatatgattc-ataaatggatttgttatgttccactttaattg |
390 |
Q |
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|||||| || ||| |||||||||||||||||||||||||| ||||| |
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| T |
3653151 |
tggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 46 - 303
Target Start/End: Complemental strand, 3657452 - 3657199
Alignment:
| Q |
46 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
145 |
Q |
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|||||||||||||||||| ||| ||||||||| ||||| || | | | |||||| | |||||||||||||||| | ||| || |||||| ||||||||| |
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| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
|
| Q |
146 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
245 |
Q |
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| T |
3657352 |
cagctgcattgccgcttaaaatggagagca----agacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaatta---tcatttaaggc |
3657260 |
T |
|
| Q |
246 |
tttgt---ctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
303 |
Q |
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| T |
3657259 |
tttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 3649322 - 3649181
Alignment:
| Q |
65 |
gtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaa |
164 |
Q |
| |
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| T |
3649322 |
gtggaggatcaacgcgtagtagtggttatggagattgagtgaaagatcagtttcaggtacatcatgagaagcttctgctctcagttctattgccacttaa |
3649223 |
T |
|
| Q |
165 |
aatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
206 |
Q |
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| T |
3649222 |
gatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
148 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
206 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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