View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_424 (Length: 247)

Name: NF10481A_low_424
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_424
NF10481A_low_424
[»] chr7 (30 HSPs)
chr7 (1-214)||(21681249-21681464)
chr7 (1-217)||(21627746-21627963)
chr7 (107-217)||(21740671-21740781)
chr7 (88-208)||(21704307-21704426)
chr7 (1-132)||(21991458-21991588)
chr7 (1-217)||(21689035-21689244)
chr7 (1-217)||(21713825-21714040)
chr7 (1-146)||(21622745-21622882)
chr7 (1-217)||(21791645-21791854)
chr7 (1-65)||(21791512-21791576)
chr7 (143-215)||(21651734-21651806)
chr7 (1-65)||(21788002-21788066)
chr7 (2-65)||(21663875-21663938)
chr7 (148-217)||(21784566-21784635)
chr7 (157-217)||(21663698-21663758)
chr7 (1-65)||(21704425-21704487)
chr7 (1-65)||(21639468-21639532)
chr7 (1-65)||(21651859-21651923)
chr7 (149-217)||(21725571-21725639)
chr7 (152-207)||(21784691-21784746)
chr7 (149-207)||(21771645-21771703)
chr7 (161-216)||(21991408-21991463)
chr7 (28-65)||(21771759-21771796)
chr7 (28-65)||(21785163-21785200)
chr7 (165-216)||(21622693-21622744)
chr7 (154-192)||(21787911-21787949)
chr7 (28-65)||(21725694-21725731)
chr7 (131-217)||(21639321-21639404)
chr7 (183-217)||(21791419-21791453)
chr7 (28-64)||(21740895-21740931)
[»] scaffold0182 (2 HSPs)
scaffold0182 (149-217)||(34209-34277)
scaffold0182 (28-65)||(34332-34369)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21681464 - 21681249
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnn--tgttacacttcactttaatatattt 98  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||          | | |||||||||||||||| ||||    
T  21681464 gtgctttagtttttcatgctctcaaacctttacctaataaacaagataagtaaatatgcttgcttaaaaaaaaaatctcacacttcactttaatagattt 21681365  T
Q  99 tttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatgg 198  Q
    ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  21681364 tttatacctgtcctctttgctactaaagcaacttgtcctcagaacaaactatataatgtctatcactttactcaatggacaagaaaagtaaaattcatgg 21681265  T
Q  199 aaaaaggatcattgct 214  Q
    |||  ||||| |||||    
T  21681264 aaattggatctttgct 21681249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21627963 - 21627746
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnn-tgttacacttca-ctttaatatattt 98  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||         | |||||||||| |||||||  ||||    
T  21627963 gtgctttagattttcatgctctcaaacctttacctaatgagcaagataagtaaatatgcttgcttaaaacaaaatcttacacttcaactttaatcaattt 21627864  T
Q  99 tttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatgg 198  Q
    || ||||||||||||||   | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21627863 tt-atacctgtcctcttcactgctaaagtaacttgtcctcagaacaaactatataatgtccatcactttactcaacggacaagaaaagtaaaattcatgg 21627765  T
Q  199 aaaaaggatcattgctttt 217  Q
    ||| |||||| ||||||||    
T  21627764 aaataggatcgttgctttt 21627746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 21740781 - 21740671
Alignment:
Q  107 tgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaagga 206  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21740781 tgtcctctttgttactaaagtaacttgtcctcataacaaactatataatgtccatcactttactcaatggacaagaaaagtaaaattcatggaaaaagga 21740682  T
Q  207 tcattgctttt 217  Q
    |||||||||||    
T  21740681 tcattgctttt 21740671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 21704426 - 21704307
Alignment:
Q  88 ttaatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||||    
T  21704426 ttaatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagaacaaa-tatataatgtccatcactttactcaatgtacaagaaaagt 21704328  T
Q  188 aaaattcatggaaaaaggatc 208  Q
    |||||||  ||||| ||||||    
T  21704327 aaaattctcggaaacaggatc 21704307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21991588 - 21991458
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacacttcactttaatatattttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||    
T  21991588 gtgctttagattttcattctctcgaacctttacctaatgaacaagataagtaaatatgcttgctt-aaaaaaatgttacacttcactttaatagattttt 21991490  T
Q  101 tatacctgtcctctttgttactaaagtaactt 132  Q
    ||||| ||||||||||  ||||||||||||||    
T  21991489 tatacttgtcctctttactactaaagtaactt 21991458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21689244 - 21689035
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacactt-cactttaatatatttt 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        | |||||||| |||||||| ||  |||    
T  21689244 gtgctttagattttcatgctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt----aaaatattacacttccactttaa-atgattt 21689150  T
Q  100 ttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatgga 199  Q
    ||||||||||||||||   | |||||||||||||| ||| || | |||||    | |||||  |||| |||||||||  |||||||||||||||||||||    
T  21689149 ttatacctgtcctcttcactgctaaagtaacttgttctcggaacgaacta---cacgtccaccacttaactcaatggggaagaaaagtaaaattcatgga 21689053  T
Q  200 aaaaggatcattgctttt 217  Q
    ||| ||||  ||||||||    
T  21689052 aaagggatatttgctttt 21689035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21714040 - 21713825
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgt--tacacttc-actttaatatatt 97  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||        | |  || | ||| ||||||||| |||    
T  21714040 gtgctttaaattttcatgctctcaaacctttacctaatgaacaagttaagtaaatctgctttcttaaaaaaactatcttaaatttcgactttaataaatt 21713941  T
Q  98 ttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatg 197  Q
    ||| |||| |||||||||   | |||||||||||||||||| || | ||||||||   |||||   ||||||||||||||||||||||||||||||||||    
T  21713940 ttt-atacttgtcctcttcactgctaaagtaacttgtcctcggaacgaactatat---gtccaccgctttactcaatggacaagaaaagtaaaattcatg 21713845  T
Q  198 gaaaaaggatcattgctttt 217  Q
    |||||| |||| ||||||||    
T  21713844 gaaaaaagatctttgctttt 21713825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 21622882 - 21622745
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacacttcactttaatatattttt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||         |||        | | |||||||||||||||| ||||||    
T  21622882 gtgctttagattttcatgctctcaaacctttacctaatgaacaagataagtaac--------ctttaaaaaaatctcacacttcactttaatagattttt 21622791  T
Q  101 tatacctgtcctctttgttactaaagtaacttgtcctcagagcaaa 146  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  21622790 tatacctgtcctcttttttactaaagtaacttgtcctcagaacaaa 21622745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21791854 - 21791645
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacactt-cactttaatatatttt 99  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||        | |||||||| ||||||||| |  |||    
T  21791854 gtgctttagattttcatgctttcaaacctttacctactgaacaagataagtaaatatgcttgctt----aaaatattacacttccactttaat-tgattt 21791760  T
Q  100 ttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatgga 199  Q
    ||||||||||||||||   | |||||||||||||| ||| || | |||||    | |||||  | || |||||||||| |||||||||||||||||||||    
T  21791759 ttatacctgtcctcttcactgctaaagtaacttgttctcggaacgaacta---cacgtccaccagttaactcaatggagaagaaaagtaaaattcatgga 21791663  T
Q  200 aaaaggatcattgctttt 217  Q
    ||| ||||  ||||||||    
T  21791662 aaagggatatttgctttt 21791645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21791576 - 21791512
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21791576 gtgctttagattttcatgctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 21791512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 21651806 - 21651734
Alignment:
Q  143 caaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctt 215  Q
    |||||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21651806 caaactatataatgtctaccactttactcaatggacaagaaatgtaaaattcatggaaaaaggatctttgctt 21651734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21788066 - 21788002
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  21788066 gtgctttagtttttcatgctctcaaacctttacctaatgaacaagataactaaatatgcttgctt 21788002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 21663938 - 21663875
Alignment:
Q  2 tgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21663938 tgctttggattttttttctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 21663875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 21784635 - 21784566
Alignment:
Q  148 tatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 217  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  21784635 tatataatgtccatcactttactcattggacaagaaaagtaaaattcacggaaaaaggatatttgctttt 21784566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 21663758 - 21663698
Alignment:
Q  157 tccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 217  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21663758 tccatcactttgctcaatggacaagaaaagtaaaattcatggaaataggatcattgctttt 21663698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21704487 - 21704425
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  21704487 gtgctttagtttttcattctc--aaacctttacctaatgaacaagataactaaatatgcttgctt 21704425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21639532 - 21639468
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    |||||||| |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||    
T  21639532 gtgctttaaattttcatgctcttgaaactttacctaatgaacaagataagtaaatatgcttgctt 21639468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21651923 - 21651859
Alignment:
Q  1 gtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    ||||| ||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  21651923 gtgctctagatttccatgctcacaaacctttacctaattaacaagataagtaaatatgcttgctt 21651859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 21725639 - 21725571
Alignment:
Q  149 atataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 217  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||  ||||||||    
T  21725639 atataatgtccatcactttactcattggacaagaaaagtaaaattcacagaaaaaggatatttgctttt 21725571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 21784746 - 21784691
Alignment:
Q  152 taatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggat 207  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  21784746 taatgttcatcactttactcaatggacaagaaaagtaaaattcacggaaaaaggat 21784691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 21771703 - 21771645
Alignment:
Q  149 atataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggat 207  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||    
T  21771703 atataatgtccatcactttactcattggacaagaaaagtaaaattcacagaaaaaggat 21771645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 21991463 - 21991408
Alignment:
Q  161 taactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgcttt 216  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||  |||||||    
T  21991463 taactttactcaatagacaagaaaagtgaaattcatggaaaaaggatatttgcttt 21991408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 21771796 - 21771759
Alignment:
Q  28 ctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21771796 ctttacctaatgaacaagataagtaaatatgcttgctt 21771759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 21785200 - 21785163
Alignment:
Q  28 ctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21785200 ctttacctaatgaacaagataagtaaatatgcttgctt 21785163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 21622744 - 21622693
Alignment:
Q  165 tttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgcttt 216  Q
    ||||||| ||||||||||||||||||||||||||||| || ||| |||||||    
T  21622744 tttactcgatggacaagaaaagtaaaattcatggaaatagtatctttgcttt 21622693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 21787949 - 21787911
Alignment:
Q  154 atgtccataactttactcaatggacaagaaaagtaaaat 192  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  21787949 atgtccatcactttactcaatggacaagaaaagtaaaat 21787911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 21725731 - 21725694
Alignment:
Q  28 ctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    |||||||||||||||||||||||||||||||| |||||    
T  21725731 ctttacctaatgaacaagataagtaaatatgcgtgctt 21725694  T

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Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 21639404 - 21639321
Alignment:
Q  131 ttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 217  Q
    ||||||||| | ||||||||||   |||||  ||||||||||||| |||| | |||||||||| ||| |||||||||| ||||||||    
T  21639404 ttgtcctcataacaaactatat---gtccaccactttactcaatgtacaaaataagtaaaattaatgaaaaaaggatctttgctttt 21639321  T

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Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 21791453 - 21791419
Alignment:
Q  183 aaagtaaaattcatggaaaaaggatcattgctttt 217  Q
    |||||||||||||||||||||||||| ||||||||    
T  21791453 aaagtaaaattcatggaaaaaggatctttgctttt 21791419  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 21740931 - 21740895
Alignment:
Q  28 ctttacctaatgaacaagataagtaaatatgcttgct 64  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  21740931 ctttacctattgaagaagataagtaaatatgcttgct 21740895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 34277 - 34209
Alignment:
Q  149 atataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 217  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||  ||||||||    
T  34277 atataatgtccatcactttactcattggacaagaaaagtaaaattcacagaaaaaggatatttgctttt 34209  T

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Target: scaffold0182; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 34369 - 34332
Alignment:
Q  28 ctttacctaatgaacaagataagtaaatatgcttgctt 65  Q
    |||||||||||||||||||||||||||||||| |||||    
T  34369 ctttacctaatgaacaagataagtaaatatgcgtgctt 34332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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