View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_425 (Length: 247)

Name: NF10481A_low_425
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_425
NF10481A_low_425
[»] chr1 (36 HSPs)
chr1 (17-245)||(31745389-31745616)
chr1 (91-237)||(40377012-40377158)
chr1 (91-238)||(7549813-7549960)
chr1 (116-229)||(36393479-36393592)
chr1 (116-237)||(50974564-50974685)
chr1 (91-223)||(45584509-45584641)
chr1 (91-237)||(31652593-31652738)
chr1 (91-238)||(44719151-44719298)
chr1 (116-208)||(4039621-4039713)
chr1 (116-237)||(5851530-5851649)
chr1 (115-221)||(25302066-25302172)
chr1 (91-192)||(25095579-25095680)
chr1 (94-229)||(34596118-34596250)
chr1 (114-202)||(45753443-45753531)
chr1 (143-237)||(12148289-12148383)
chr1 (91-200)||(34445639-34445748)
chr1 (121-229)||(12636305-12636414)
chr1 (116-229)||(40203076-40203189)
chr1 (116-199)||(5115634-5115717)
chr1 (94-200)||(28672315-28672420)
chr1 (114-235)||(5787434-5787554)
chr1 (148-230)||(42850094-42850176)
chr1 (146-223)||(50222611-50222688)
chr1 (116-203)||(33744159-33744246)
chr1 (142-237)||(48947225-48947320)
chr1 (91-232)||(13954126-13954271)
chr1 (121-203)||(39241430-39241512)
chr1 (147-203)||(48253319-48253375)
chr1 (141-220)||(44442270-44442349)
chr1 (117-202)||(3338051-3338137)
chr1 (115-169)||(5597710-5597764)
chr1 (91-153)||(27396102-27396164)
chr1 (138-236)||(50328308-50328405)
chr1 (110-203)||(14774091-14774184)
chr1 (119-192)||(28171517-28171590)
chr1 (156-200)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (91-237)||(49446583-49446730)
chr4 (91-230)||(44646522-44646661)
chr4 (116-229)||(44647879-44647992)
chr4 (92-236)||(42197007-42197150)
chr4 (91-212)||(6316821-6316942)
chr4 (110-222)||(9802621-9802732)
chr4 (119-234)||(20390023-20390138)
chr4 (108-223)||(42844030-42844145)
chr4 (117-237)||(41468080-41468200)
chr4 (119-213)||(33982423-33982517)
chr4 (141-231)||(44088286-44088376)
chr4 (95-203)||(25196110-25196218)
chr4 (133-226)||(50115059-50115149)
chr4 (91-192)||(40480205-40480306)
chr4 (116-203)||(12103864-12103951)
chr4 (116-229)||(24395194-24395308)
chr4 (132-222)||(49144774-49144864)
chr4 (156-237)||(38494748-38494829)
chr4 (91-170)||(28165362-28165442)
chr4 (120-202)||(39727579-39727660)
chr4 (91-203)||(50086432-50086543)
chr4 (119-192)||(34235910-34235984)
chr4 (156-222)||(36721591-36721657)
chr4 (125-234)||(49769110-49769219)
chr4 (133-192)||(31871090-31871149)
chr4 (91-221)||(52373050-52373181)
chr4 (156-238)||(41370157-41370239)
chr4 (132-221)||(1696194-1696283)
chr4 (116-189)||(53919863-53919936)
chr4 (116-208)||(27346293-27346385)
chr4 (114-189)||(5387947-5388022)
chr4 (117-219)||(51105918-51106020)
chr4 (121-170)||(27706954-27707003)
chr4 (114-222)||(27981368-27981477)
chr4 (91-152)||(44088211-44088272)
chr4 (91-220)||(52650697-52650826)
chr4 (115-203)||(11875452-11875539)
chr4 (91-190)||(23230272-23230372)
chr4 (91-203)||(47560596-47560707)
[»] chr3 (28 HSPs)
chr3 (91-237)||(34758899-34759045)
chr3 (92-237)||(54911988-54912133)
chr3 (116-237)||(18399149-18399271)
chr3 (92-229)||(30687077-30687214)
chr3 (91-230)||(27968170-27968307)
chr3 (91-230)||(52340118-52340257)
chr3 (103-221)||(38388694-38388812)
chr3 (91-202)||(28434481-28434591)
chr3 (91-192)||(779710-779810)
chr3 (91-208)||(38704969-38705086)
chr3 (127-225)||(7754772-7754871)
chr3 (116-229)||(4033026-4033138)
chr3 (138-229)||(19898100-19898191)
chr3 (136-203)||(55110042-55110109)
chr3 (92-229)||(25548196-25548333)
chr3 (120-194)||(43749507-43749581)
chr3 (132-202)||(53433211-53433281)
chr3 (119-174)||(1680511-1680566)
chr3 (112-203)||(2831538-2831629)
chr3 (116-200)||(39976721-39976804)
chr3 (136-211)||(54955783-54955859)
chr3 (115-169)||(11404700-11404754)
chr3 (142-192)||(40546348-40546398)
chr3 (91-128)||(29497248-29497285)
chr3 (91-136)||(29611990-29612035)
chr3 (147-203)||(21490626-21490682)
chr3 (128-192)||(30463992-30464056)
chr3 (134-174)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (91-234)||(8247037-8247180)
chr5 (91-236)||(3263717-3263862)
chr5 (94-237)||(19692696-19692840)
chr5 (119-230)||(5356295-5356406)
chr5 (117-237)||(35395184-35395304)
chr5 (91-236)||(10051700-10051845)
chr5 (91-232)||(28793305-28793446)
chr5 (93-230)||(1354345-1354481)
chr5 (119-237)||(22473432-22473551)
chr5 (116-212)||(21582367-21582463)
chr5 (98-200)||(14042440-14042542)
chr5 (117-214)||(31889611-31889709)
chr5 (91-174)||(4725897-4725979)
chr5 (146-232)||(142350-142436)
chr5 (114-168)||(22871913-22871967)
chr5 (115-200)||(3758194-3758279)
chr5 (128-200)||(26663642-26663714)
chr5 (128-200)||(26935237-26935309)
chr5 (94-229)||(14474998-14475133)
chr5 (91-169)||(27650866-27650944)
chr5 (117-170)||(37976444-37976497)
chr5 (115-169)||(12933327-12933381)
chr5 (128-174)||(24241210-24241256)
chr5 (143-200)||(24241039-24241096)
chr5 (178-238)||(43145883-43145943)
[»] chr2 (26 HSPs)
chr2 (91-238)||(8789826-8789973)
chr2 (91-236)||(44941072-44941216)
chr2 (91-234)||(20682990-20683133)
chr2 (116-230)||(8773670-8773784)
chr2 (114-212)||(4238341-4238438)
chr2 (114-237)||(18053008-18053130)
chr2 (116-229)||(42945012-42945125)
chr2 (91-202)||(6761751-6761862)
chr2 (119-229)||(2393038-2393148)
chr2 (116-230)||(34546265-34546379)
chr2 (103-229)||(42966938-42967066)
chr2 (129-201)||(1070568-1070639)
chr2 (91-236)||(5961954-5962101)
chr2 (91-205)||(3882586-3882700)
chr2 (94-186)||(433551-433643)
chr2 (115-167)||(8898861-8898913)
chr2 (91-203)||(18227092-18227204)
chr2 (117-200)||(2825983-2826066)
chr2 (103-170)||(13442636-13442703)
chr2 (119-203)||(35228732-35228816)
chr2 (116-174)||(3199541-3199599)
chr2 (114-221)||(7271769-7271880)
chr2 (92-229)||(14102297-14102435)
chr2 (115-200)||(31448315-31448400)
chr2 (121-174)||(45212057-45212110)
chr2 (115-203)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (117-237)||(30412910-30413030)
chr7 (91-237)||(8170001-8170147)
chr7 (127-237)||(48137789-48137899)
chr7 (116-210)||(42493703-42493798)
chr7 (91-222)||(47507580-47507711)
chr7 (95-233)||(38452146-38452283)
chr7 (121-218)||(2964049-2964146)
chr7 (91-223)||(16878677-16878809)
chr7 (118-229)||(44391426-44391537)
chr7 (157-233)||(46684550-46684626)
chr7 (114-205)||(5248088-5248179)
chr7 (116-208)||(2741168-2741260)
chr7 (114-232)||(15034793-15034911)
chr7 (119-227)||(43670409-43670517)
chr7 (162-237)||(47305516-47305592)
chr7 (111-200)||(676400-676488)
chr7 (103-202)||(37352436-37352535)
chr7 (108-192)||(33887887-33887971)
chr7 (91-235)||(36015002-36015141)
chr7 (117-231)||(36285774-36285887)
chr7 (91-174)||(45375399-45375483)
chr7 (156-203)||(15995924-15995971)
chr7 (94-203)||(35754017-35754126)
chr7 (143-219)||(44495238-44495314)
chr7 (156-203)||(14574768-14574815)
chr7 (85-192)||(35599837-35599944)
chr7 (114-203)||(31477085-31477175)
chr7 (90-203)||(10031945-10032058)
chr7 (113-166)||(25120218-25120271)
chr7 (162-229)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (91-237)||(31206280-31206426)
chr8 (121-229)||(38956884-38956992)
chr8 (114-238)||(5217747-5217869)
chr8 (116-221)||(45368729-45368834)
chr8 (117-230)||(5020051-5020162)
chr8 (118-229)||(20169716-20169827)
chr8 (91-232)||(9632898-9633040)
chr8 (88-170)||(33636685-33636767)
chr8 (94-220)||(39691121-39691247)
chr8 (116-229)||(7044329-7044442)
chr8 (91-191)||(24103087-24103187)
chr8 (91-183)||(39932721-39932813)
chr8 (91-229)||(10335020-10335159)
chr8 (116-154)||(36819755-36819793)
chr8 (91-166)||(37564393-37564468)
chr8 (92-154)||(2124141-2124203)
chr8 (91-151)||(5968377-5968437)
chr8 (91-203)||(22209376-22209488)
[»] chr6 (12 HSPs)
chr6 (116-237)||(12383008-12383129)
chr6 (116-229)||(16442075-16442188)
chr6 (119-214)||(8176324-8176419)
chr6 (117-200)||(12307821-12307904)
chr6 (91-220)||(31702747-31702874)
chr6 (94-202)||(7465451-7465558)
chr6 (160-235)||(22695473-22695549)
chr6 (92-163)||(22696000-22696071)
chr6 (120-218)||(35241410-35241509)
chr6 (116-229)||(6048268-6048381)
chr6 (119-200)||(26311807-26311889)
chr6 (91-192)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (91-192)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 31745616 - 31745389
Alignment:
Q  17 atcaataaaacatgtcataacaaaaatatttaattatgacaagaacagtgttgagttaatnnnnnnngttaattgtcttgttaaccagtgcctccgagac 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||| |    
T  31745616 atcaataaaacatgtcataacataaatatttaattatgacaagaacagtgttgagttaataaaaaa-gttaattgtcttgttaactagtgcctccgaggc 31745518  T
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31745517 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttttatgataagttactat 31745418  T
Q  217 ttaaaggccttaactagtgcctagtgcct 245  Q
    |||||||||||||||||||||||||||||    
T  31745417 ttaaaggccttaactagtgcctagtgcct 31745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 40377012 - 40377158
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| |   | |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||| ||||| | || |||||||||    
T  40377012 gtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgatta 40377111  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    ||||  |||||||||||| |||| |||||||||||||||||||||||    
T  40377112 cacaacttttcatgataaattaccatttaaaggccttaactagtgcc 40377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 7549813 - 7549960
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||| |  || ||||||||||||  |||  ||||||| |||| ||||||||| |||||||||||||||||||   ||||||||||| |    
T  7549813 gtcttgttaacgagtgtcctcgggacactctttaagaatttcaaaagaagaaataattttataaaaaagtcaaatatttcgatttctgatgcattgatca 7549912  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgcct 238  Q
    ||||  ||||||||||||||||| |||||||||||||| |||||||||    
T  7549913 cacaacttttcatgataagttacaatttaaaggccttagctagtgcct 7549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 36393479 - 36393592
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||| ||||  ||||||| ||||||| |||||| ||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |    
T  36393479 cactctttaaggatttcaaaagaaaaaattatgttataaaaaaatcaaatattttgattttcgatgcattgattacacgtattttcatgataagttacca 36393578  T
Q  216 tttaaaggccttaa 229  Q
    |||||||| |||||    
T  36393579 tttaaaggtcttaa 36393592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 50974685 - 50974564
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    ||||||| || ||||  ||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||||||| |||| |    
T  50974685 cactcttgaaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttcatgataaattacca 50974586  T
Q  216 tttaaaggccttaactagtgcc 237  Q
    |||||||| |||||| ||||||    
T  50974585 tttaaaggtcttaacgagtgcc 50974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 45584509 - 45584641
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| | |||| ||| | |||||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||  |||   |||| ||||||||    
T  45584509 gtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgatta 45584608  T
Q  191 cacatattttcatgataagttactatttaaagg 223  Q
    |||||||||||||||||||||||| ||||||||    
T  45584609 cacatattttcatgataagttactttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 31652593 - 31652738
Alignment:
Q  91 gtcttgttaaccagtgcctccg-agacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 189  Q
    ||||||||||| |||| ||||| ||| ||||||||| ||||  |||| || |||||||||||||| ||||||||||||||  |||  ||||||| |||||    
T  31652593 gtcttgttaacgagtgtctccggaga-actctttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgatt 31652690  T
Q  190 acacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  31652691 acacatattttcatgataggttaccatttaaagcccttaactagtgcc 31652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 44719151 - 44719298
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||| | ||| |||||| ||||| ||||| |||| |||| |||||||||||| ||||| ||||||| |||||   |||||| ||||||    
T  44719151 gtcttgttaacgagtgtccccgggacactttttaaggattccaaaaaaatatattattttataaaaaagttaaatattccgatttctgatgcaatgatta 44719250  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgcct 238  Q
    |||| ||||||||||||| |||| ||||||||  ||||||||||||||    
T  44719251 cacacattttcatgataaattaccatttaaagctcttaactagtgcct 44719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 4039713 - 4039621
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 208  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||  | |||||||||||||| ||||||| |||||||    
T  4039713 cactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttatgataa 4039621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 5851530 - 5851649
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||| ||||  ||||||| |||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||| |||  ||||||||||||||| |    
T  5851530 cactctttaaggatttcaaaagaagaaataattttataaaaaaatcaaagatttcgattttcgatgcattgattacaaata--ttcatgataagttacca 5851627  T
Q  216 tttaaaggccttaactagtgcc 237  Q
    ||||||||| ||| ||||||||    
T  5851628 tttaaaggctttatctagtgcc 5851649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 25302066 - 25302172
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 214  Q
    ||||||||||| ||||| |||| || |||| ||| ||||| ||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||     
T  25302066 acactctttaaggattccaaaacaaaaaataattgtataaaaaagtcaaagatttcgattttcaatacattgattacacatattttcatgataagttacc 25302165  T
Q  215 atttaaa 221  Q
    |||||||    
T  25302166 atttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 25095579 - 25095680
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||| | |||| ||||  |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||||||||    
T  25095579 gtcttgttagcgagtgtctccatgacactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgatta 25095678  T
Q  191 ca 192  Q
    ||    
T  25095679 ca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 34596250 - 34596118
Alignment:
Q  94 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 193  Q
    ||||||||  ||||||||| |||| || |||| ||||||||||||| ||||||||||||||  || ||||||||||||||| || |||||||||||||||    
T  34596250 ttgttaacgggtgcctccg-gacattcattaaggattctaaaagaagaaattattttataa--aattcaaatatttcgattttcaatgcattgattacac 34596154  T
Q  194 atattttcatgataagttactatttaaaggccttaa 229  Q
    ||| |||||| | ||||||  ||||||||| |||||    
T  34596153 ataatttcataaaaagttatcatttaaaggtcttaa 34596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 45753443 - 45753531
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 202  Q
    |||||||||||||||||||||||||| ||||||||| | || || |||||||||||| ||| || |||||||||||||||| |||||||    
T  45753443 gacactctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttca 45753531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 12148383 - 12148289
Alignment:
Q  143 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    |||||||||| | ||||| |||||||| ||||  | |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  12148383 attattttatgaaaaagtaaaatattttgatttccaatgcattggttacacatattttcatgataagttaccatttaaagactttaactagtgcc 12148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 34445639 - 34445748
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| |||   |||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||  | ||||||||||||    
T  34445639 gtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatta 34445738  T
Q  191 cacatatttt 200  Q
     |||| ||||    
T  34445739 gacatgtttt 34445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 12636414 - 12636305
Alignment:
Q  121 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat-gataagttactattta 219  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||| ||||||||||  | || ||||||||||||||||||||||  | || ||||||||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatacattgattacacatattttcataaaaaaattactattta 12636315  T
Q  220 aaggccttaa 229  Q
    |||| |||||    
T  12636314 aaggtcttaa 12636305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 40203189 - 40203076
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||| ||||  |||| || ||||||||| |||| ||||||||||||||| |||  | ||||||||||||||||||||||||    ||||||| |    
T  40203189 cactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttacca 40203090  T
Q  216 tttaaaggccttaa 229  Q
    ||||||| ||||||    
T  40203089 tttaaagaccttaa 40203076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 5115717 - 5115634
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattt 199  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| |||  | ||||||| |||||||| ||||    
T  5115717 cactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaattt 5115634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 28672420 - 28672315
Alignment:
Q  94 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 193  Q
    |||||||  ||||| |||||||||||||| ||  ||||||||| ||  ||||||||| ||| |||||||||||||| |||| |  |||||||||||||||    
T  28672420 ttgttaatgagtgcatccgagacactctt-aagcattctaaaataaacaattattttttaaaaaagtcaaatattttgattttaaatgcattgattacac 28672322  T
Q  194 atatttt 200  Q
    |||||||    
T  28672321 atatttt 28672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 5787554 - 5787434
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 213  Q
    |||||||||||| ||||| ||||||| ||| |||||||||| | ||| ||||||||| |||  | ||||||| ||||||||||||||  ||||||||||     
T  5787554 gacactctttaaggattc-aaaagaagaaaatattttataaaatagttaaatatttcaatttccaatgcattaattacacatatttttttgataagttat 5787456  T
Q  214 tatttaaaggccttaactagtg 235  Q
      ||||||| | ||||||||||    
T  5787455 attttaaagactttaactagtg 5787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 42850176 - 42850094
Alignment:
Q  148 tttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaac 230  Q
    ||||||| ||||| ||||||||||||| |||||||||| |||| | ||||||| ||||||| |||  ||||||||| ||||||    
T  42850176 tttataaaaaagttaaatatttcgattttcgatgcattaattatatatatttttatgataaattatcatttaaaggtcttaac 42850094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 50222688 - 50222611
Alignment:
Q  146 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaagg 223  Q
    ||||||||| ||| ||||||||||  ||| || ||||||||||||||| ||||||||| | || ||||||||||||||    
T  50222688 attttataaaaaaatcaaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaagg 50222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 33744246 - 33744159
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    ||||||||||  ||| ||||| ||  ||||||||| | | ||||||||||||||||||| || |||||||||||||| || |||||||    
T  33744246 cactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcat 33744159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 48947225 - 48947320
Alignment:
Q  142 aattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    ||||||||| ||| || ||||||  |||| |||  | ||||| |||||||||| |||||||| | ||||||| |||||||| ||||||||||||||    
T  48947225 aattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaagtccttaactagtgcc 48947320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 13954271 - 13954126
Alignment:
Q  91 gtcttgttaaccagtgcctccgag-----acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt 185  Q
    |||||||||||  |||||||||||     ||||||||||| ||||||| ||||| |||||| ||||||| ||| ||||| |||| ||||  | ||||| |    
T  13954271 gtcttgttaacgggtgcctccgaggtggaacactctttaaggattctagaagaagaaattactttataaaaaaatcaaaaattttgatttccaatgca-t 13954173  T
Q  186 gattacacatattttcatgataagttactatttaaaggccttaacta 232  Q
    ||||||| | |||||||  |||| ||   ||||||||||||||||||    
T  13954172 gattacatacattttcacaataaattttcatttaaaggccttaacta 13954126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 39241512 - 39241430
Alignment:
Q  121 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    ||||| |||| ||||| ||||| ||||||||||| |||   ||||||||  ||| |||||||||||||||||||| |||||||    
T  39241512 tttaaggattttaaaaaaataatttattttataaaaaaaataaatattttaattttcgatgcattgattacacatgttttcat 39241430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 48253319 - 48253375
Alignment:
Q  147 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||||||| |||||||| |||||||||| || || ||||||||| ||||||||||||    
T  48253319 ttttataaaaaagtcaactatttcgattttcaatacattgattatacatattttcat 48253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 44442270 - 44442349
Alignment:
Q  141 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 220  Q
    |||||||| | ||| ||||||||||||||| ||| || || |||| | |||||||||||| || | ||||||||||||||    
T  44442270 aaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaagttactatttaa 44442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 3338137 - 3338051
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattacacatattttca 202  Q
    |||||||||| |||||||||||| ||||||||| || || ||| | || |||||| ||| || |||||||||||||| | |||||||    
T  3338137 actctttaaacattctaaaagaagaaattatttcataaaaaaaattaagtatttcaattttcaatgcattgattacataaattttca 3338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 5597710 - 5597764
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 169  Q
    |||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||    
T  5597710 acactctttaaatattttaaaagaagaaattattctataaaaaagttaaatattt 5597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 27396102 - 27396164
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttata 153  Q
    ||||||||||| ||| || |||||||| |||||||  ||||||||| || |||||||||||||    
T  27396102 gtcttgttaacaagtaccaccgagacattctttaagaattctaaaataagaaattattttata 27396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 50328405 - 50328308
Alignment:
Q  138 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgc 236  Q
    ||||||||||||||||| ||| | |||||||| |||| | ||| | || |||| ||||||||| |||||||||||  ||||||| | ||||| ||||||    
T  50328405 aataaattattttataaaaaatt-aaatattttgatttttgatactttaattatacatatttttatgataagttatcatttaaaagtcttaattagtgc 50328308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 14774091 - 14774184
Alignment:
Q  110 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||||| | |||||||  ||||||||| ||| ||||||||  | | ||| ||||||||||||||| || ||||||||| || ||| ||||||||    
T  14774091 ccgagatattctttaagcattctaaaataatcaattatttgtttaaaaaatcaaatatttcgattttcaatgcattgaatatacacattttcat 14774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 28171590 - 28171517
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 192  Q
    |||||||  |||| ||||||| |||||||||||||| ||||| ||||||||| ||| |  ||||||| ||||||    
T  28171590 tctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattaca 28171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 15549642 - 15549686
Alignment:
Q  156 aaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    ||||| ||||||||||||| || |||||||||||||||| |||||    
T  15549642 aaagtaaaatatttcgattttcaatgcattgattacacacatttt 15549686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 49446730 - 49446583
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatt 189  Q
    ||||||||||| ||||||  || | |||||||||| ||||| ||||||| || ||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  49446730 gtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattgatt 49446631  T
Q  190 acacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49446630 acacatattttcatgataagttactatttaaaggccttaactagtgcc 49446583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 44646661 - 44646522
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| ||| | || ||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  44646661 gtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgatta 44646562  T
Q  191 cacatattttcatgataagttactatttaaaggccttaac 230  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  44646561 cacatattttcatgataagttactattcaaaagccttaac 44646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 44647992 - 44647879
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||    
T  44647992 cactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttcatgataagttacta 44647893  T
Q  216 tttaaaggccttaa 229  Q
    || |||||||||||    
T  44647892 ttcaaaggccttaa 44647879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 42197007 - 42197150
Alignment:
Q  92 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 191  Q
    |||||||||| ||||||| ||  |||||||||||| |||||||||||| |||||||||||| | ||| |||||||||| |||| ||||| ||||||||||    
T  42197007 tcttgttaacgagtgccttcggaacactctttaaa-attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattac 42197105  T
Q  192 acatattttcatgataagttactatttaaaggccttaactagtgc 236  Q
    ||||||||| ||||||| |||| |||||||| | |||||||||||    
T  42197106 acatatttttatgataaattaccatttaaagactttaactagtgc 42197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 6316942 - 6316821
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||||||| | |||||||||||||||  ||||||| |||| ||||||||| |||| |||| |||| |||| || ||||||||||||    
T  6316942 gtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgatta 6316843  T
Q  191 cacatattttcatgataagtta 212  Q
    ||||||||||||||||||||||    
T  6316842 cacatattttcatgataagtta 6316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 9802732 - 9802621
Alignment:
Q  110 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 209  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||  |||| ||||||||||||||||||| ||||||||    
T  9802732 ccgagacactctttaaa-attctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatacattgattacacatatttttatgataag 9802634  T
Q  210 ttactatttaaag 222  Q
    ||| | |||||||    
T  9802633 ttattctttaaag 9802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 20390023 - 20390138
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 218  Q
    |||||||  |||| |||| || |||| ||||||||| |||||||||||||| |||| ||||||||||||| |||||  ||||||||||||||||| ||||    
T  20390023 tctttaagaattccaaaacaagaaataattttataaaaaagtcaaatattttgattttcgatgcattgatcacacaacttttcatgataagttaccattt 20390122  T
Q  219 aaaggccttaactagt 234  Q
    ||| ||||||||||||    
T  20390123 aaaagccttaactagt 20390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 42844030 - 42844145
Alignment:
Q  108 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgata 207  Q
    ||||| ||||||||| |||||||  |||| |  |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42844030 ctccgggacactcttgaaagatttcaaaaaacgaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcataata 42844129  T
Q  208 agttactatttaaagg 223  Q
    | ||||  ||||||||    
T  42844130 aattaccctttaaagg 42844145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 41468080 - 41468200
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    |||||||||  |||| ||||||| ||||||| |||||| ||||| ||||||| |||||   |||||||||||||||  |||||| |||| ||||||| ||    
T  41468080 actctttaagaattccaaaagaagaaattatgttataaaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccat 41468179  T
Q  217 ttaaaggccttaactagtgcc 237  Q
    |||||||||||||||||||||    
T  41468180 ttaaaggccttaactagtgcc 41468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 33982423 - 33982517
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 213  Q
    ||||||| ||||  ||||||| |||||||||||||| ||||| |||||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  33982423 tctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttcatgataagttac 33982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 44088286 - 44088376
Alignment:
Q  141 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaact 231  Q
    |||||||||||| | ||| |||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44088286 aaattattttattaaaaaatcaaatattttgatttttggtgcattgattacacatatcttcatgataagttactatttaaagtccttaact 44088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 25196110 - 25196218
Alignment:
Q  95 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 194  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||  | |  |||| ||||||||    
T  25196110 tgttaacgagtgcctccgaaacactctttaaggattctaaaagaaaaaattaatttataaaaaagtcaaatattttgatttccaagacattaattacaca 25196209  T
Q  195 tattttcat 203  Q
    | |||||||    
T  25196210 tgttttcat 25196218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 50115059 - 50115149
Alignment:
Q  133 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 226  Q
    ||||||| |||||||||||||| ||||||||| |||||||||  | ||||||||||||||||||||   |||||||||||| ||||||||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcctatgcattgattacacatatt---atgataagttaccatttaaaggcct 50115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 40480306 - 40480205
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  40480306 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 40480207  T
Q  191 ca 192  Q
    ||    
T  40480206 ca 40480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 12103951 - 12103864
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||  | |  ||||||||||||||||||||||    
T  12103951 cactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcat 12103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 24395308 - 24395194
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatg-cattgattacacatattttcatgataagttac 213  Q
    |||||||||| ||||||||||||| |||||| ||||||| ||| |||||||||||||||| || | | ||||||||||||||||||||||   |||||||    
T  24395308 cactctttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatt-tctaagacattgattacacatattttcatacaaagttac 24395210  T
Q  214 tatttaaaggccttaa 229  Q
    ||| |||||| |||||    
T  24395209 tatataaaggtcttaa 24395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 49144774 - 49144864
Alignment:
Q  132 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 222  Q
    |||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||||||||| ||||||| |||| || |||| ||||||||    
T  49144774 taaaagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccatttaaag 49144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 38494829 - 38494748
Alignment:
Q  156 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||| ||||||| |||  || ||||| ||||||||||||||    
T  38494829 aaaggcaaatctttcgattttcgatgcattgattacacatatttttatgataaattatcatataaagaccttaactagtgcc 38494748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 28165362 - 28165442
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 170  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||| |||||||||||| || ||| |||||||||||    
T  28165362 gtcttgttaacgagtgcccctgagatactctttaaagattctaaaagaagaaattattttataaaaaaaatcaaatatttc 28165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 39727660 - 39727579
Alignment:
Q  120 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 202  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||   ||||||||||||||| | |||||||    
T  39727660 ctttaaggattctaaaagaataaattattctataa-aaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 50086543 - 50086432
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| ||| || |||||||||| |||| |||| ||  ||||||| | ||| ||| |||||||||| |||| || ||||||||| ||    
T  50086543 gtcttgttaacgagtgcc-ccgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaata 50086445  T
Q  191 cacatattttcat 203  Q
    |||||||||||||    
T  50086444 cacatattttcat 50086432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 34235910 - 34235984
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattaca 192  Q
    |||||||| ||| ||||||||||||||||||||| || ||||||||| ||||| ||| || ||||||||||||||    
T  34235910 tctttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattttcaatgcattgattaca 34235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 36721657 - 36721591
Alignment:
Q  156 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 222  Q
    ||||||||||||||| |||||| |||||||||||||||| |||| ||| | || |||||||||||||    
T  36721657 aaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 49769219 - 49769110
Alignment:
Q  125 aagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggc 224  Q
    |||||| |||||||| |||| ||||||||| |||||  || ||||  |||   || | |||||||||||||||||| |||||||||||| |||||||||     
T  49769219 aagattttaaaagaagaaataattttataaaaaagttgaaaattttaatttatgacgaattgattacacatatttttatgataagttaccatttaaaggt 49769120  T
Q  225 cttaactagt 234  Q
    ||||| ||||    
T  49769119 cttaagtagt 49769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 31871149 - 31871090
Alignment:
Q  133 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 192  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||  ||||||||||||||||    
T  31871149 aaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattaca 31871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 52373181 - 52373050
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 189  Q
    ||||||||||| ||| |||||| |||||||||||| |||| | ||| || ||||||||| || || |||||||||||||   ||| || ||||||  |||    
T  52373181 gtcttgttaacgagtacctccgggacactctttaaggattttgaaataagaaattatttcataaaaaaagtcaaatattataattttcaatgcataaatt 52373082  T
Q  190 acacatattttcatgataagttactatttaaa 221  Q
    ||||| |||||||  | || ||||||||||||    
T  52373081 acacaaattttcagaaaaaattactatttaaa 52373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 41370239 - 41370157
Alignment:
Q  156 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 238  Q
    ||||| ||||||||| ||| || |||||||||||||||| |||||||| | || |||||||| |||| ||||||  |||||||    
T  41370239 aaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtgcct 41370157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 1696283 - 1696194
Alignment:
Q  132 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaa 221  Q
    |||||||| | ||||||  |||| |||| |||||||||| |||  |||||||||||||||| | |||||||  | |||||||||||||||    
T  1696283 taaaagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaa 1696194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 53919863 - 53919936
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 189  Q
    ||||||||||  |||  |||||||||||||||| ||||| ||||||||| ||||| |||  |||||||||||||    
T  53919863 cactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgatt 53919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 27346293 - 27346385
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 208  Q
    |||||||||| |||||||||| || || ||||||||||| ||||||||| |||| ||||   | |||||| |||| ||| ||||| |||||||    
T  27346293 cactctttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattttgatttctggtgcatttattatacacatttttatgataa 27346385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 5388022 - 5387947
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 189  Q
    |||||| | |||||||| |||||||| |||||||||||  | ||| | ||||||||||||| || |||||||||||    
T  5388022 gacactttataaagattttaaaagaagaaattattttaataaaaaattaaatatttcgattttcaatgcattgatt 5387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 51105918 - 51106020
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    |||||||||| ||||||||| ||  ||||||| | ||| ||||||||||||||  ||| || || ||  |||||| ||||||||||| |  |||||||||    
T  51105918 actctttaaatattctaaaataaacaattattatttaaaaaagtcaaatattttaattttcaatacacggattacgcatattttcataaatagttactat 51106017  T
Q  217 tta 219  Q
    |||    
T  51106018 tta 51106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 27707003 - 27706954
Alignment:
Q  121 tttaaagattctaaaagaataaattattttataataaagtcaaatatttc 170  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||    
T  27707003 tttaatgattctaaaataagaaatcattttataagaaagtcaaatatttc 27706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 27981368 - 27981477
Alignment:
Q  114 gacactctttaaagattct-aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 212  Q
    ||||||||||||| ||| | |||| || |||||| ||||| | ||| | ||||||||| ||| || || |||| ||||||||||||| |||   ||||||    
T  27981368 gacactctttaaaaatttttaaaaaaaaaaattaatttatgaaaaaattaaatatttcaattttcaatacattaattacacatatttacatacaaagtta 27981467  T
Q  213 ctatttaaag 222  Q
    ||||||||||    
T  27981468 ctatttaaag 27981477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 44088211 - 44088272
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat 152  Q
    ||||||||||| ||||||||||   || | |||||| |||||||||||| ||||||||||||    
T  44088211 gtcttgttaacgagtgcctccggagcaatttttaaaaattctaaaagaagaaattattttat 44088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 52650826 - 52650697
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||||||||||  |||||||||||| || |||||  || |||||||| | ||  || ||||||  |||| ||| || || || ||||||    
T  52650826 gtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaattcactgatta 52650727  T
Q  191 cacatattttcatgataagttactatttaa 220  Q
    ||||  ||||||| | || |||||||||||    
T  52650726 cacaatttttcataaaaaattactatttaa 52650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 11875539 - 11875452
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    ||||||||||||| || ||||| || |||||||||||||  ||| | ||||||||  ||| || |||||||||||| ||| ||||||||    
T  11875539 acactctttaaagcttttaaaaaaagaaattattttatacaaaaattaaatattt-aattttcaatgcattgattatacacattttcat 11875452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 23230372 - 23230272
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 189  Q
    ||||| ||||| |||| ||||||||||||||||||  |||| ||||| | ||||||||  || || ||||| |||| |||| ||| || |||||||||||    
T  23230372 gtcttattaacgagtgtctccgagacactctttaagcattccaaaaggagaaattattccatgaaaaaagttaaatgtttcaattttcaatgcattgatt 23230273  T
Q  190 a 190  Q
    |    
T  23230272 a 23230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 47560596 - 47560707
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||| || |||||||||||||||  |||| |||| ||  ||||||||| ||| ||| |||||| ||| |||| |  || |||||||||    
T  47560596 gtcttgttaacgagtgtcttcgagacactctttaatcattccaaaataagcaattatttt-taaaaaaatcaaatgttttgatttttaatacattgatta 47560694  T
Q  191 cacatattttcat 203  Q
    |||  ||||||||    
T  47560695 cacgcattttcat 47560707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 34758899 - 34759045
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||||||| | |||||||||| ||||| |||||||  ||||||||||||| ||||| ||||||||||| ||  |||||||||||||    
T  34758899 gtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatta 34758998  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    || |||||| |||||||||||||||||||||| ||||||||||||||    
T  34758999 catatatttccatgataagttactatttaaagcccttaactagtgcc 34759045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 54912133 - 54911988
Alignment:
Q  92 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 191  Q
    |||||||||| |||| | ||||  ||||||||||  |||| ||||||||||| |||||||||| ||||| ||||||||| |||   ||||||||||||||    
T  54912133 tcttgttaacgagtgtccccgaagcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttcggatgcattgattac 54912034  T
Q  192 acatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||    
T  54912033 acatattttcatgataagttgtcatttataggccttaactagtgcc 54911988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 18399271 - 18399149
Alignment:
Q  116 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 214  Q
    |||||||||| ||||| ||||||| |||| ||||| |||| |||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||     
T  18399271 cactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattacacaacttttcatgataagttacc 18399172  T
Q  215 atttaaaggccttaactagtgcc 237  Q
    ||||||| |||||||||| ||||    
T  18399171 atttaaaagccttaactaatgcc 18399149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 30687214 - 30687077
Alignment:
Q  92 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 191  Q
    |||||||||| |||| ||| |||| ||||||||| ||||||||||||| ||||||| |||||| ||| ||||| | || |||| | ||||||||||||||    
T  30687214 tcttgttaacgagtgtctcagagatactctttaaggattctaaaagaagaaattatgttataaaaaaatcaaagagtttgatttttgatgcattgattac 30687115  T
Q  192 acatattttcatgataagttactatttaaaggccttaa 229  Q
    ||||||||||||||||| |||  |||||||| ||||||    
T  30687114 acatattttcatgataaattatcatttaaagaccttaa 30687077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 27968170 - 27968307
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gatt 189  Q
    ||||||||||| |||||| ||| |||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||| |||| |||| |||||||||| ||||    
T  27968170 gtcttgttaacgagtgcc-ccg-gacactttttaaggattccaaaagaagaaataattt-ataaaaaagtcaaagattttgattttcgatgcatttgatt 27968266  T
Q  190 acacatattttcatgataagttactatttaaaggccttaac 230  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27968267 acacatattttcatgataagttaccatttaaaggccttaac 27968307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 52340257 - 52340118
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgatt 189  Q
    ||||||||||| ||| | |||||| |||||||||| ||||| ||| ||| |||| ||||||||| |||  ||||| |||||||||  |||||||||||||    
T  52340257 gtcttgttaacgagttc-tccgaggcactctttaaggattccaaaggaagaaataattttataaaaaaaatcaaagatttcgatttccgatgcattgatt 52340159  T
Q  190 acacatattttcatgataagttactatttaaaggccttaac 230  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  52340158 acacatatttttatgataagttaccatttaaaggccttaac 52340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 38388694 - 38388812
Alignment:
Q  103 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 202  Q
    |||||||||| | |||| ||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| ||  ||||||||||||||||||||| |    
T  38388694 agtgcctccggggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatattttta 38388793  T
Q  203 tgataagttactatttaaa 221  Q
    | | || ||||||||||||    
T  38388794 taaaaatttactatttaaa 38388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 28434481 - 28434591
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||  ||| |||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||| |||| |||||||||||||||    
T  28434481 gtcttgttaacgagtgctcccgggacactctttaaggattttaagagaataaattatttcataa-aaagtcaaatattttgattttcgatgcattgatta 28434579  T
Q  191 cacatattttca 202  Q
    || | |||||||    
T  28434580 cataaattttca 28434591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 779810 - 779710
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||| ||||  | ||||||| ||||    
T  779810 gtcttgttaacgagtgcctcc-agacactctttaaaaattctaaaagaataaattattttatgaaaaagttaaatattttgatttgcaatgcattcatta 779712  T
Q  191 ca 192  Q
    ||    
T  779711 ca 779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 38705086 - 38704969
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| ||||   |||||||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||  ||||||||||||||    
T  38705086 gtcttgttaacgagtgcccccgaagtactctttaagaattcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgatgcattgatta 38704987  T
Q  191 cacatattttcatgataa 208  Q
    |||||||||  |||||||    
T  38704986 cacatatttgtatgataa 38704969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 7754871 - 7754772
Alignment:
Q  127 gattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcc 225  Q
    ||||| ||||||| || | ||||||||| ||| |||||  |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7754871 gattccaaaagaagaagtaattttataaaaaaagtcaacgatttcgatttccgatgcattgattagacatattttcatgataagttactatttaaaggcc 7754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 4033026 - 4033138
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||| ||||| |||||||||| || |||||||||||||| ||| ||||| |||||||||  ||||||| |||||||||| ||||||||||||| ||   |    
T  4033026 cactttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgatgca-tgattacacacattttcatgataaatttaca 4033124  T
Q  216 tttaaaggccttaa 229  Q
    |||||||| |||||    
T  4033125 tttaaaggacttaa 4033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 19898191 - 19898100
Alignment:
Q  138 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaa 229  Q
    ||||||||||||||||  ||| ||||||||||| ||| || ||||||||||||||||||||||||| | || |||| || |||||| |||||    
T  19898191 aataaattattttatataaaaatcaaatatttcaattttcaatgcattgattacacatattttcataaaaatttacaatgtaaaggtcttaa 19898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 55110042 - 55110109
Alignment:
Q  136 agaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||| |||||||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  55110042 agaaaaaattattttataaaaaaatcaaatatttcgattttcaatgcattgattacatatattttcat 55110109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 25548333 - 25548196
Alignment:
Q  92 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 190  Q
    |||||||||| ||| || |||| ||||||||||| || |||||||||| ||| |||||||||| ||| || ||||||||| |||    ||||||||||||    
T  25548333 tcttgttaacgagtacccccga-acactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgatta 25548235  T
Q  191 cacatattttcatgataagttactatttaaaggccttaa 229  Q
    ||||||||||||| | || |||  ||||||||| |||||    
T  25548234 cacatattttcataaaaatttatcatttaaaggtcttaa 25548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 43749581 - 43749507
Alignment:
Q  120 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 194  Q
    |||||| |||||||||||||||||||||| ||| | ||||||||||||||| ||| || ||  ||||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattacaca 43749507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 53433281 - 53433211
Alignment:
Q  132 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 202  Q
    |||||||| |||||||| ||||| ||||||||||||||  ||| ||||||||||||||||| | |||||||    
T  53433281 taaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttca 53433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 1680566 - 1680511
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 174  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  1680566 tctttaaggattcaaaaagaataaattaatttataaaaaagtcaaatattttgatt 1680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 2831538 - 2831629
Alignment:
Q  112 gagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||||||||||||| ||||| |||  || |||||||||| ||||||||||||||||||| ||| |  ||||| |||||| |||  |||||||    
T  2831538 gagacactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttcaattttaaatgcaatgattatacaagttttcat 2831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 39976721 - 39976804
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    |||||||| || ||||||||| ||| ||||||||| ||| |||||||||| |||| ||| || || |||||||||||| ||||||    
T  39976721 cactctttgaacattctaaaataatcaattatttt-taaaaaagtcaaatgtttctattttcaatacattgattacacgtatttt 39976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 54955859 - 54955783
Alignment:
Q  136 agaataaattattttata-ataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtt 211  Q
    |||||||||||||||||| | ||| |||||||||| |||| | |||||||  |||||| |||||||||||| |||||    
T  54955859 agaataaattattttatagaaaaaatcaaatattttgatttttgatgcataaattacatatattttcatgaaaagtt 54955783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 11404700 - 11404754
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 169  Q
    ||||||||| ||||||  |||| ||||||||||||||||| ||||| ||||||||    
T  11404700 acactcttttaagattaaaaaaaaataaattattttataaaaaagttaaatattt 11404754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 40546348 - 40546398
Alignment:
Q  142 aattattttataataaagtcaaatatttcgattctcgatgcattgattaca 192  Q
    ||||||||| ||| |||||||||||||||||||  | ||||||||||||||    
T  40546348 aattattttttaaaaaagtcaaatatttcgatttccaatgcattgattaca 40546398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 29497285 - 29497248
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaaga 128  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  29497285 gtcttgttaacgagtgcctccgagacattctttaaaga 29497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 29611990 - 29612035
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaa 136  Q
    ||||||||||| |||||| ||| ||||||||||||| |||||||||    
T  29611990 gtcttgttaacgagtgcccccgggacactctttaaacattctaaaa 29612035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 21490682 - 21490626
Alignment:
Q  147 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||| ||| ||||||||||||||| ||| || || ||||||| ||||||||||||||    
T  21490682 ttttgtaaaaaagtcaaatatttcaattttcaattcattgatgacacatattttcat 21490626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 30464056 - 30463992
Alignment:
Q  128 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 192  Q
    |||| ||||||| |||||||| ||||| ||||||||| ||||| ||| |  ||||||||||||||    
T  30464056 attccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattaca 30463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 37775411 - 37775371
Alignment:
Q  134 aaagaataaattattttataataaagtcaaatatttcgatt 174  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  37775411 aaagaagaaattattttataaaaaagttaaatatttcgatt 37775371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 8247037 - 8247180
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||||||||    
T  8247037 gtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgatta 8247136  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagt 234  Q
     |||  ||||||||||||||||| |||||||| |||||||||||    
T  8247137 tacaacttttcatgataagttaccatttaaagaccttaactagt 8247180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 3263717 - 3263862
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||||| |||| | ||||||||||  |||  ||||||| |||| ||||||||| ||||||||| |||||||||  ||||||||||||||    
T  3263717 gtcttgttaacgagtgcttccggggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgatta 3263816  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgc 236  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  3263817 cacatattttaatgataagttaccatttaaagaccttaactagtgc 3263862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 19692696 - 19692840
Alignment:
Q  94 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattaca 192  Q
    |||||||| |||| | ||| | |||||||||||||||  ||||||| |||||| ||||||| ||| |||||||||||||||| || ||||||||||||||    
T  19692696 ttgttaacgagtgtccccggggcactctttaaagatttcaaaagaagaaattaatttataaaaaaagtcaaatatttcgattttcaatgcattgattaca 19692795  T
Q  193 catattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    |||| ||| |||||||||||| |||||||||||||||| ||||||    
T  19692796 cataatttgatgataagttacaatttaaaggccttaaccagtgcc 19692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 5356406 - 5356295
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 218  Q
    ||||||| ||| | |||| || |||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5356406 tctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattt 5356307  T
Q  219 aaaggccttaac 230  Q
    |||| |||||||    
T  5356306 aaagaccttaac 5356295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 35395184 - 35395304
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    ||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | ||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttcatgataagttgccat 35395283  T
Q  217 ttaaaggccttaactagtgcc 237  Q
    | |||||  ||||| ||||||    
T  35395284 taaaaggtgttaacgagtgcc 35395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 10051700 - 10051845
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||| | |  || |||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||  |||  ||||||||||||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgatgcattgatta 10051799  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgc 236  Q
     |||  ||||||| ||||||||| ||||||||| ||||||||||||    
T  10051800 tacaacttttcataataagttaccatttaaaggtcttaactagtgc 10051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 28793305 - 28793446
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||||| ||||   | |||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||| ||||    
T  28793305 gtcttgttaacgagtgcttccggtgcgctctttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgatgcattaatta 28793404  T
Q  191 cacatattttcatgataagttactatttaaaggccttaacta 232  Q
    || ||||||| ||||||| |||| |||||||  |||||||||    
T  28793405 catatatttttatgataatttaccatttaaataccttaacta 28793446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 1354481 - 1354345
Alignment:
Q  93 cttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 192  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || |||||||||||||| ||||| |||||||||||||    ||  |||||||| |    
T  1354481 cttgttaacaagtgcctccgagacactcttaaga-attctaaaaaaagaaattattttataaaaaagttaaatatttcgatttctaatatattgattata 1354383  T
Q  193 catattttcatgataagttactatttaaaggccttaac 230  Q
     ||||||||||||||| ||||  |||||||||||||||    
T  1354382 tatattttcatgataatttaccttttaaaggccttaac 1354345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 22473432 - 22473551
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatt 217  Q
    ||||||| ||||  ||||||| |||||||||||||| |||  ||||||||||  |||   ||||||||||||||||||||||||| |||||||||| |||    
T  22473432 tctttaaggatttcaaaagaagaaattattttataaaaaaaatcaaatattttaatttctgatgcattgattacacatattttcacgataagttaccatt 22473531  T
Q  218 taaaggccttaactagtgcc 237  Q
    ||||| ||||||||||||||    
T  22473532 taaagcccttaactagtgcc 22473551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 21582367 - 21582463
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 212  Q
    |||| ||||| ||||| |||||||||||||||||||||| | |||||||||||||||||   ||| || |||| ||||| |||||||||||||||||    
T  21582367 cactttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatacaatgatcacacacattttcatgataagtta 21582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 14042440 - 14042542
Alignment:
Q  98 taaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatat 197  Q
    |||| |||| ||||| || |||||||||||||||||||| ||||||||||| | ||| |||||||||||||| ||||  | |||||||||||| ||| ||    
T  14042440 taacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattgattatacaaat 14042539  T
Q  198 ttt 200  Q
    |||    
T  14042540 ttt 14042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 31889611 - 31889709
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 214  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||| || ||||||||| |||    ||||||||||||||||||||||||| | ||||||||    
T  31889611 actctttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 4725979 - 4725897
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 174  Q
    ||||||||||| |||| | |||| ||||| ||||| ||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  4725979 gtcttgttaacgagtgtccccgaaacactgtttaaggatttcaaaagaataaattattttataa-aaagtcaaagatttcgatt 4725897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 142436 - 142350
Alignment:
Q  146 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaacta 232  Q
    ||||||||| ||| ||||||||||| |||   ||| ||||||||||||||| ||| ||||||||||||  |||||||| ||||||||    
T  142436 attttataaaaaaatcaaatatttcaatttctgatacattgattacacataattttatgataagttacattttaaagggcttaacta 142350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 22871913 - 22871967
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatt 168  Q
    |||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  22871913 gacactctttaaggattctaaaagaagaaaatattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 3758194 - 3758279
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    |||||||||||| ||| ||||| ||| ||||||| | ||| ||||||||||||||||||| || ||||||||| || |||| ||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattttcaatgcattgaatatacatttttt 3758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 26663642 - 26663714
Alignment:
Q  128 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26663642 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26663714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 26935237 - 26935309
Alignment:
Q  128 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26935237 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 14475133 - 14474998
Alignment:
Q  94 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 193  Q
    |||||||| ||||| |||| | | ||||| ||  ||| |||||||| |||||||| ||||| || |||||||||||| |||   ||||| |||||||||     
T  14475133 ttgttaacaagtgcttccggggctctcttcaagcattttaaaagaagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacat 14475034  T
Q  194 atattttcatgataagttactatttaaaggccttaa 229  Q
    | |||||||  | |||||||||||| |||| |||||    
T  14475033 aaattttcaaaaaaagttactatttgaaggtcttaa 14474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 27650944 - 27650866
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 169  Q
    ||||||||||| ||| ||||||  |||||||||||| |||| |||| || |||||||| ||||| ||||| ||||||||    
T  27650944 gtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattt 27650866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 37976444 - 37976497
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 170  Q
    |||||||||| |||||||||||| ||||||||| |||| ||| |||||||||||    
T  37976444 actctttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttc 37976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 12933327 - 12933381
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 169  Q
    |||||||| || ||||  |||| ||||||||||||||||| ||||||||||||||    
T  12933327 acactcttcaacgatttcaaaataataaattattttataagaaagtcaaatattt 12933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 24241256 - 24241210
Alignment:
Q  128 attctaaaagaataaattattttataataaagtcaaatatttcgatt 174  Q
    |||||||||||| |||||||||||  | |||||||||||||||||||    
T  24241256 attctaaaagaaaaaattattttaataaaaagtcaaatatttcgatt 24241210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 24241096 - 24241039
Alignment:
Q  143 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    |||||||||||| ||||||||||||||| ||| |  || ||||||||| |||||||||    
T  24241096 attattttataaaaaagtcaaatatttcaatttttaatacattgattatacatatttt 24241039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 43145883 - 43145943
Alignment:
Q  178 gatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 238  Q
    ||||||||||||||| | |||||||  | || |||||||||||||| ||||| ||||||||    
T  43145883 gatgcattgattacataaattttcaaaaaaaattactatttaaaggtcttaaatagtgcct 43145943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 8789826 - 8789973
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||| | | || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||   |||||||||||||    
T  8789826 gtcttgttaacgagtactttcgggacactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgatta 8789925  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgcct 238  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||||||    
T  8789926 cacatattttcatgttaagttaccctttaaagaccttaaccagtgcct 8789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 44941216 - 44941072
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||| ||| ||| |||||| ||||| ||| |||||||||  ||||||||||||||    
T  44941216 gtcttgttaacgagtgcc-ctgagacactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgatta 44941118  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgc 236  Q
    || |||||||| |||||| |||| ||||||||||||||||||||||    
T  44941117 catatattttcctgataaattaccatttaaaggccttaactagtgc 44941072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 20683133 - 20682990
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||  ||||||||| ||| |||||||||||||||  ||||||||||||||    
T  20683133 gtcttgttaacgagtgcccccgggacactctttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgatgcattgatta 20683034  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagt 234  Q
    |||||||||| |||||||||||| || ||||  | |||||||||    
T  20683033 cacatatttttatgataagttaccatataaaaactttaactagt 20682990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 8773784 - 8773670
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||||||||| ||||||||      
T  8773784 cactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgttaagttaccc 8773685  T
Q  216 tttaaaggccttaac 230  Q
    ||||||| |||||||    
T  8773684 tttaaagaccttaac 8773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 4238438 - 4238341
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 212  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4238438 gacactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcat-ataagtta 4238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 18053130 - 18053008
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 213  Q
    |||||||||||| ||||  ||||||| |||||||||||||| |||||||||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||    
T  18053130 gacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgattatacatactttcatgataaattac 18053031  T
Q  214 tatttaaaggccttaactagtgcc 237  Q
      ||||||||||||||||| ||||    
T  18053030 -ctttaaaggccttaactaatgcc 18053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 42945125 - 42945012
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||| ||||| |||| |||||||| | |||||||||| | ||| |||||||||||||||  |  ||||||||||||||||||||| ||||||| ||||||    
T  42945125 cactttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttccagtgcattgattacacatatttttatgataatttacta 42945026  T
Q  216 tttaaaggccttaa 229  Q
    ||||||||||||||    
T  42945025 tttaaaggccttaa 42945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 6761862 - 6761751
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||||| |||||| ||||||||||  |||| |||||||||||| ||| ||||| ||||||||||||||| |||  | ||||||||||||    
T  6761862 gtcttgttaacaagtgcttccgaggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgatta 6761763  T
Q  191 cacatattttca 202  Q
    || | |||||||    
T  6761762 cataaattttca 6761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 2393148 - 2393038
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 218  Q
    ||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |  |||||||| ||||| |||||||   |||||||||| |    
T  2393148 tctttaaggattctaaaagaagaaattaatttataaaaaagtcaaatattttgattctcaagacattgatttcacatgttttcatacaaagttactatat 2393049  T
Q  219 aaaggccttaa 229  Q
    ||||| |||||    
T  2393048 aaaggtcttaa 2393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 34546379 - 34546265
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||| |||||||   ||||||||||||||||| |||||||||||||||||  |    
T  34546379 cactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattacacacattttcatgataagttatca 34546280  T
Q  216 tttaaaggccttaac 230  Q
    ||||| || ||||||    
T  34546279 tttaatggtcttaac 34546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 42966938 - 42967066
Alignment:
Q  103 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttc 201  Q
    |||||||||||||||||||||||  || ||||||||| ||||||||| |||| ||| || ||||||||| |||| |||||||||||||||| | ||||||    
T  42966938 agtgcctccgagacactctttaagaatactaaaagaagaaattatttcataaaaaaagttaaatatttcaattcccgatgcattgattacataaattttc 42967037  T
Q  202 atgataag-ttactatttaaaggccttaa 229  Q
    |  | ||  |||||||||||||| |||||    
T  42967038 aaaaaaaaattactatttaaaggtcttaa 42967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 1070568 - 1070639
Alignment:
Q  129 ttctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttc 201  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||    
T  1070568 ttctaaaagaatatattattttataataaagtaaaatattttgattttcaatg-attgattacacatattttc 1070639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 5962101 - 5961954
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa-taaattattttat-aataaagtcaaatatttcgattctcgatgcattgat 188  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||| ||||  || || ||| | ||||||||| |||  | ||||||||||    
T  5962101 gtcttgttaacgagtgcctccgagacactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcattgat 5962002  T
Q  189 tacacatattttcatgataagttactatttaaaggccttaactagtgc 236  Q
    |||| | |||||||  |  |||||||||||||||| ||||| ||||||    
T  5962001 tacataaattttcaaaaacagttactatttaaaggtcttaaatagtgc 5961954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 3882586 - 3882700
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||||||  || | ||||||||||  ||||||||| ||  ||||||| | ||| || ||||||||||||| || || ||||||||||||    
T  3882586 gtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatta 3882685  T
Q  191 cacatattttcatga 205  Q
    |||| ||||||||||    
T  3882686 cacacattttcatga 3882700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 433643 - 433551
Alignment:
Q  94 ttgttaaccagtgcctccgag-acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 186  Q
    |||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||| | |||||||||    
T  433643 ttgttaacgagtgcc-ccgaggacactctttaaggattccaaaagaataaattaatttataaaaaagttaaatattttgatttttgatgcattg 433551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 8898913 - 8898861
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatat 167  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||||||    
T  8898913 acaccctttaatgattctaaaataagaaattattttataataaagtcaaatat 8898861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 18227092 - 18227204
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||| |||||  |||||||||||| ||| ||||| ||  ||||||| |  |  ||||||||||||||||||| || ||||||||||||    
T  18227092 gtcttgttaacgagtgtctccggaacactctttaaacattataaaataagtaattattcttcataaaagtcaaatatttcgattttcaatgcattgatta 18227191  T
Q  191 cacatattttcat 203  Q
     | | ||||||||    
T  18227192 aatacattttcat 18227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 2826066 - 2825983
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    |||||||||  || |||||| || |||||||||| ||| ||||| |||||||||||||  | |||||||||||||||| |||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttt 2825983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 13442703 - 13442636
Alignment:
Q  103 agtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 170  Q
    |||||||||||   ||||||||||||||| |||||||||||||||||||| || ||||| |||||||||    
T  13442703 agtgcctccgaagtactctttaaagattc-aaaagaataaattattttataaaaaaagttaaatatttc 13442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 35228732 - 35228816
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    ||||||| ||||  ||||||| |||||||||| ||| ||  |||||||||||||||    ||||||| |||||||||||||||||    
T  35228732 tctttaaggatttcaaaagaagaaattattttctaaaaagatcaaatatttcgatttctaatgcatttattacacatattttcat 35228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 3199599 - 3199541
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 174  Q
    ||||||||||  ||||||||| || |||||||||||||| ||| |||||||||| ||||    
T  3199599 cactctttaataattctaaaataagaaattattttataaaaaattcaaatattttgatt 3199541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 7271769 - 7271880
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaa----gtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 209  Q
    |||||||||||| |||||||||| || ||| ||| |||||| |||    |||||||||||  |||  | |||||||||||||| |||||||||| | |||    
T  7271769 gacactctttaaggattctaaaaaaagaaactatcttataaaaaaaaaagtcaaatatttttatttccaatgcattgattacatatattttcataaaaag 7271868  T
Q  210 ttactatttaaa 221  Q
    |||  |||||||    
T  7271869 ttatcatttaaa 7271880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 14102435 - 14102297
Alignment:
Q  92 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 190  Q
    |||||||||| ||||||||||   ||||||||||| || | |||| || ||||||||| | || ||| || |||||||||||||  | || |||||||||    
T  14102435 tcttgttaacgagtgcctccggagcactctttaaacatgccaaaataagaaattatttaaaaaaaaaagttaaatatttcgatttccaatacattgatta 14102336  T
Q  191 cacatattttcatgataagttactatttaaaggccttaa 229  Q
    ||||  ||||||| |  |||||||| ||| || ||||||    
T  14102335 cacactttttcataaatagttactacttatagtccttaa 14102297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 31448400 - 31448315
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    ||||||||||||||||   |||||| |||||||||||||| ||| | ||| |||| ||||  |||| |||| ||||| ||||||||    
T  31448400 acactctttaaagatttctaaagaagaaattattttataaaaaatttaaaaattttgatttccgatacattaattactcatatttt 31448315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 45212057 - 45212110
Alignment:
Q  121 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 174  Q
    ||||| ||||||||||  |||||||||||||||| ||| |||||||||| ||||    
T  45212057 tttaaggattctaaaaagataaattattttataaaaaaatcaaatattttgatt 45212110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 33276005 - 33275918
Alignment:
Q  115 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||||||||||  ||||||||| || |||||||||| ||| ||||| ||||||||| ||| || || ||| || |||||| ||||||||    
T  33276005 acactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaatacataga-tacacacattttcat 33275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 30413030 - 30412910
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    ||||||||| ||||  ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||    
T  30413030 actctttaaggatttcaaaagaagaaactattttatgataaagtcaaatatttcgattcccgatgcattgattatacatattttcgtgataaattactat 30412931  T
Q  217 ttaaaggccttaactagtgcc 237  Q
    |||||||||||||| ||||||    
T  30412930 ttaaaggccttaaccagtgcc 30412910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 8170001 - 8170147
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||| |  |||  ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||  |||| |||||||||    
T  8170001 gtcttgttaacaagtactcccggaacactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgatta 8170100  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
     |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  8170101 tacatatgttcatgataagttactttttaaagaccttaactagtgcc 8170147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 48137789 - 48137899
Alignment:
Q  127 gattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 226  Q
    ||||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||| || |    
T  48137789 gattccaaaagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattacacatatttttatgataaattactatttaaaagcat 48137888  T
Q  227 taactagtgcc 237  Q
    |||||||||||    
T  48137889 taactagtgcc 48137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 42493703 - 42493798
Alignment:
Q  116 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagt 210  Q
    |||||||||| ||||| ||||||| |||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42493703 cactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttcatgataagt 42493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 47507580 - 47507711
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||| ||||| | |||||||||| ||||||||||||| |||| ||||||||| ||| ||||| ||||| |||  ||||| ||||||||    
T  47507580 gtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgatta 47507679  T
Q  191 cacatattttcatgataagttactatttaaag 222  Q
    ||||| ||||||||| ||||||| ||||||||    
T  47507680 cacattttttcatgagaagttaccatttaaag 47507711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 38452146 - 38452283
Alignment:
Q  95 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 194  Q
    ||||||| |||||| |||| ||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||| |||  |||||||||| |||||||    
T  38452146 tgttaacgagtgcccccga-acattctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacaca 38452244  T
Q  195 tattttcatgataagttactatttaaaggccttaactag 233  Q
    ||||||||| |||| |||   ||||||||||||||||||    
T  38452245 tattttcataataaattatcttttaaaggccttaactag 38452283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 2964049 - 2964146
Alignment:
Q  121 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 218  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattacacatatttttatgataagttactattt 2964146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 16878677 - 16878809
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    |||||||||||  |||  |||| |||||||||||||||||| | ||  | ||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  16878677 gtcttgttaacaggtgtttccgggacactctttaaagattcaataaagagaaattatttcataaaaaagttaaatatttcgattctcaatgcattgatta 16878776  T
Q  191 cacatattttcatgataagttactatttaaagg 223  Q
    || ||||||| |||  |||||||||||||||||    
T  16878777 caaatatttttatgcaaagttactatttaaagg 16878809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 44391537 - 44391426
Alignment:
Q  118 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  44391537 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 44391439  T
Q  217 ttaaaggccttaa 229  Q
    ||||||| |||||    
T  44391438 ttaaaggtcttaa 44391426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 46684626 - 46684550
Alignment:
Q  157 aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactag 233  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  46684626 aagtcaaatatttcgattttcgacgcattgattacatatattttcatgataaattaccatttaaaggccttaactag 46684550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 5248088 - 5248179
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatga 205  Q
    |||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  5248088 gacattctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttatga 5248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 2741168 - 2741260
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 208  Q
    |||||||||| |||| |||||||| |||||||||||| | ||| |||||||||| ||||  ||||||||||||||||||||||||||| ||||    
T  2741168 cactctttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgatgcattgattacacatattttcataataa 2741260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 15034911 - 15034793
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gattacacatattttcatgataagtta 212  Q
    |||||||||||| ||||| || | || ||| |||||||||| ||||||||||||||||||   | ||||||| |||||||| ||||||||| ||||||||    
T  15034911 gacactctttaaggattccaagaaaagaaaatattttataa-aaagtcaaatatttcgatatccaatgcatttgattacacgtattttcataataagtta 15034813  T
Q  213 ctatttaaaggccttaacta 232  Q
    |  |||||||||||||||||    
T  15034812 ccttttaaaggccttaacta 15034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 43670409 - 43670517
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 218  Q
    |||||||||||| |||| ||| |||| ||||||||| ||| ||||| |||| |||| |||||||| |||||||| || |||| ||||||| |||| ||||    
T  43670409 tctttaaagattttaaatgaagaaataattttataaaaaaatcaaagattttgattttcgatgcactgattacatatgtttttatgataaattaccattt 43670508  T
Q  219 aaaggcctt 227  Q
    |||| ||||    
T  43670509 aaagacctt 43670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 47305592 - 47305516
Alignment:
Q  162 aaatatttcga-ttctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    ||||||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  47305592 aaatatttcgaattttcgatccatagattacacatattttcatgataagttaccatttaaacaccttaactagtgcc 47305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 676488 - 676400
Alignment:
Q  111 cgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    |||||||||||||||| ||||||||| ||  ||||||||  ||| ||||| ||||||||||||| |  ||||||||||||||||||||||    
T  676488 cgagacactctttaaacattctaaaataagtaattatttattaa-aaagttaaatatttcgattttaaatgcattgattacacatatttt 676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 37352535 - 37352436
Alignment:
Q  103 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 202  Q
    ||||||||||||||| ||||||| ||||| |||| || ||||||||  || | ||||||||||||||| |||  | ||||||| |||||||| |||||||    
T  37352535 agtgcctccgagacattctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttca 37352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 33887971 - 33887887
Alignment:
Q  108 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 192  Q
    ||||||||||||||||||  |||| |||| ||  ||||||| | ||| ||||||||||||||| ||| || ||||||||||||||    
T  33887971 ctccgagacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattaca 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 36015141 - 36015002
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| | || ||||| |||| ||||||| ||||  |||| || |||||||||||||| ||| |||||||| || ||| || ||  ||||||||    
T  36015141 gtcttgttaacgaatgtctccgggacattctttaaggatttcaaaaaaagaaattattttataaaaaaatcaaatatgtcaattttcaatttattgatta 36015042  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtg 235  Q
    ||| ||||||     ||||||||  ||||||| ||||||||||||    
T  36015041 cacgtatttt-----taagttaccttttaaagaccttaactagtg 36015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 36285887 - 36285774
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||| ||| |||||||| |||  ||||||||| |||  |||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||      
T  36285887 actctttaaaaattttaaaagaagaaagcattttataaaaaaaatcaaatattttgatttccgatacattgattaca--tatttttatgataagttacat 36285790  T
Q  216 tttaaaggccttaact 231  Q
    |||||||| |||||||    
T  36285789 tttaaaggacttaact 36285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 45375483 - 45375399
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaa-ttattttataataaagtcaaatatttcgatt 174  Q
    ||||| ||||| |||||||||| | |||||||||| ||||||||||||| ||| |||| |||||| ||||| |||||||| ||||    
T  45375483 gtcttattaacgagtgcctccggggcactctttaaggattctaaaagaagaaacttatgttataaaaaagttaaatattttgatt 45375399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 15995924 - 15995971
Alignment:
Q  156 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||    
T  15995924 aaagttaaatatttcgattttcaatgcattgattacacatattttcat 15995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 35754017 - 35754126
Alignment:
Q  94 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 193  Q
    |||| ||| |||| ||| || |||||||||||  |||  |||| || |||||||||||||| | | |||| |||||||||| || ||||||| |||||||    
T  35754017 ttgtcaacgagtgtctctgaaacactctttaagaatttcaaaaaaagaaattattttataaaataatcaagtatttcgattttcaatgcattaattacac 35754116  T
Q  194 atattttcat 203  Q
    || |||||||    
T  35754117 atgttttcat 35754126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 44495238 - 44495314
Alignment:
Q  143 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattta 219  Q
    |||||||||||| ||| | ||||||||||||| |  || ||||||||||||||||||| || | |||||| ||||||    
T  44495238 attattttataaaaaatttaaatatttcgatttttaattcattgattacacatatttttataacaagttattattta 44495314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 14574768 - 14574815
Alignment:
Q  156 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    ||||| ||||| ||||||| || |||||||||||||||||||||||||    
T  14574768 aaagttaaatacttcgattttcaatgcattgattacacatattttcat 14574815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 35599944 - 35599837
Alignment:
Q  85 ttaattgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcat 184  Q
    ||||| ||||||||||| ||||||||||||| |||||||||| || |||||  |  |||||||| | ||| ||| ||||||| ||| | | || ||||||    
T  35599944 ttaatggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcat 35599845  T
Q  185 tgattaca 192  Q
    ||| ||||    
T  35599844 tgaataca 35599837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 31477085 - 31477175
Alignment:
Q  114 gacactctttaaagattctaaaagaat-aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 203  Q
    |||||| ||||| |||||||||| ||  |||||||| ||||| || |||||| |  | |||| || |||||||||||||||||||||||||    
T  31477085 gacactatttaaggattctaaaaaaaagaaattattgtataaaaacgtcaaaaaaattgattttcaatgcattgattacacatattttcat 31477175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 10032058 - 10031945
Alignment:
Q  90 tgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 189  Q
    ||||| |||||| |||||| ||| ||||||||||||  |||| ||||  |  ||||||||| | | ||||| |||| ||||||||  | |||||||||||    
T  10032058 tgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgatt 10031959  T
Q  190 acacatattttcat 203  Q
    |||||  |||||||    
T  10031958 acacactttttcat 10031945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 25120271 - 25120218
Alignment:
Q  113 agacactctttaaagattctaaaagaataaattattttataataaagtcaaata 166  Q
    ||||||||||||||||||  |||  ||||||||||||| ||| |||||||||||    
T  25120271 agacactctttaaagatttcaaattaataaattattttttaaaaaagtcaaata 25120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 27359398 - 27359466
Alignment:
Q  162 aaatatttcgattctcgatgcattgattacacatattttcat-gataagttactatttaaaggccttaa 229  Q
    |||||||||||||  | ||||||||||||||| | |||||||  | ||||||||||||||||| |||||    
T  27359398 aaatatttcgatttccaatgcattgattacacttgttttcataaaaaagttactatttaaaggtcttaa 27359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 31206280 - 31206426
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||| ||  ||||  ||||||||| ||||| ||||| | |||||||||||||| ||| |||||||||| ||||  ||||||||||||||    
T  31206280 gtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatta 31206379  T
Q  191 cacatattttcatgataagttactatttaaaggccttaactagtgcc 237  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  31206380 cacatatttttatgataaattactatttaaaggccttaactaatgcc 31206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 38956884 - 38956992
Alignment:
Q  121 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 220  Q
    ||||| ||||||||||||   ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  38956884 tttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagttatcatttaa 38956983  T
Q  221 aggccttaa 229  Q
    || ||||||    
T  38956984 agaccttaa 38956992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 5217869 - 5217747
Alignment:
Q  114 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 213  Q
    |||||||||||| ||||| ||||  |||||| ||||||||| |||||||||||||||||||  ||||| |||||||||||||||||| ||||||| ||||    
T  5217869 gacactctttaaggattcaaaaa--ataaatgattttataaaaaagtcaaatatttcgatttccgatgtattgattacacatatttttatgataaattac 5217772  T
Q  214 tatttaaaggccttaactagtgcct 238  Q
     || |||||  ||||||||||||||    
T  5217771 catataaagatcttaactagtgcct 5217747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 45368834 - 45368729
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| ||||||||| ||| |||||||| |||||| |||||||||||||||||||||| |    
T  45368834 cactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgattatacatattttcatgataagttacca 45368735  T
Q  216 tttaaa 221  Q
    ||||||    
T  45368734 tttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 5020162 - 5020051
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |||  |||| ||||||||||||  |||||||||| ||||||| ||    
T  5020162 actctttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatacattgattacac--attttcatgacaagttaccat 5020065  T
Q  217 ttaaaggccttaac 230  Q
    ||||||||||||||    
T  5020064 ttaaaggccttaac 5020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 20169827 - 20169716
Alignment:
Q  118 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  20169827 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 20169729  T
Q  217 ttaaaggccttaa 229  Q
    ||||||| |||||    
T  20169728 ttaaaggtcttaa 20169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 9632898 - 9633040
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa--taaattattttataataaagtcaaatatttcgattctcgatgcattgat 188  Q
    ||||||||||| |||| ||||| | |||||||||||||||  |||| ||  ||||  ||| || || |||||||||||||| ||||   |||||||||||    
T  9632898 gtcttgttaacaagtgtctccgggtcactctttaaagatttcaaaaaaaaataaaaaattataaaa-aaagtcaaatattttgatttcagatgcattgat 9632996  T
Q  189 tacacatattttcatgataagttactatttaaaggccttaacta 232  Q
    ||||||||||||||| |||| || | |||||||| |||||||||    
T  9632997 tacacatattttcataataaattgccatttaaagaccttaacta 9633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 33636685 - 33636767
Alignment:
Q  88 attgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 170  Q
    |||||||| ||||| |||||  ||||||||||||||||  |||||||||| | ||||||||| |||| |||||||||| ||||    
T  33636685 attgtcttattaacgagtgcgcccgagacactctttaagcattctaaaaggagaaattatttcataaaaaagtcaaatgtttc 33636767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 39691247 - 39691121
Alignment:
Q  94 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 193  Q
    |||||||| ||||||  |||||||||||||||  |||| | |  || |||||||| | ||| ||||||||||| ||| ||| || ||||||||| |||||    
T  39691247 ttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacac 39691148  T
Q  194 atattttcatgataagttactatttaa 220  Q
    | |||||||| | || |||||||||||    
T  39691147 aaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 7044442 - 7044329
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    |||||||||| ||||||||||||| |||||| ||||| | ||||||||| ||||||||| |  | || |||||||||| | |||||||   |||||| ||    
T  7044442 cactctttaaggattctaaaagaagaaattaatttattaaaaagtcaaacatttcgatttttaaggctttgattacacgtgttttcatacaaagttatta 7044343  T
Q  216 tttaaaggccttaa 229  Q
    | |||||| |||||    
T  7044342 tataaaggtcttaa 7044329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 24103187 - 24103087
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    |||| |||||| | ||| |||||||||||||||||  ||||||||| || |||||||||| | | || ||||||| ||||||||  ||||||| ||||||    
T  24103187 gtctcgttaacgattgcttccgagacactctttaagcattctaaaataagaaattatttttttaaaaggtcaaatgtttcgatttccgatgcaatgatta 24103088  T
Q  191 c 191  Q
    |    
T  24103087 c 24103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 39932813 - 39932721
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgca 183  Q
    ||||||||||| | | ||||||| |||||||||||| ||||||||||||  ||| |||  |||| ||||||||||||||| ||| || |||||    
T  39932813 gtcttgttaacgaattcctccgaaacactctttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgca 39932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 10335159 - 10335020
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 189  Q
    ||||||||||| ||||| | ||   ||||||||||  |||| |||||||||||||||| ||| || |||||||||||||   ||| || ||||||| |||    
T  10335159 gtcttgttaacgagtgcattcggagcactctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaatt 10335060  T
Q  190 acacatattttcatgataagttactatttaaaggccttaa 229  Q
    | ||| |||||||  | || |||| |||||||||||||||    
T  10335059 atacaaattttcacaaaaaattacaatttaaaggccttaa 10335020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 36819793 - 36819755
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataa 154  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36819793 cactctttaaagattctaaaagaaaaaattattttataa 36819755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 37564468 - 37564393
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaata 166  Q
    ||||||||||| |||||||| | ||||||||||||| || |||||  || |||||||| | ||| |||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaata 37564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 2124203 - 2124141
Alignment:
Q  92 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataa 154  Q
    |||||||||| ||||   |||||||| |||||||| |||||||||||| |||||||| |||||    
T  2124203 tcttgttaacgagtgttcccgagacattctttaaacattctaaaagaagaaattattctataa 2124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 5968437 - 5968377
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattatttta 151  Q
    ||||||||||| |||||||||  | ||||||||||| ||||||||| ||  ||||||||||    
T  5968437 gtcttgttaacgagtgcctccagggcactctttaaacattctaaaacaagcaattatttta 5968377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 22209376 - 22209488
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||| ||||| |||| ||||| ||||||||||||  ||| ||||||||  |||||||   ||| ||||| |||||||| ||||  | |  |||||||||    
T  22209376 gtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgatta 22209475  T
Q  191 cacatattttcat 203  Q
    || ||||||||||    
T  22209476 catatattttcat 22209488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 12383129 - 12383008
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    ||||||||||  |||  ||||| | |||||||||||||| ||||| |||||||| ||||  |||||||||||||| ||||||||| ||||||| ||||||    
T  12383129 cactctttaagaatttcaaaaggagaaattattttataaaaaagttaaatattttgatttccgatgcattgattatacatatttttatgataaattacta 12383030  T
Q  216 tttaaaggccttaactagtgcc 237  Q
    |||||||| |||||||||||||    
T  12383029 tttaaaggacttaactagtgcc 12383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 16442075 - 16442188
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||| || |   ||||||||||||| |||||||   |||||||||    
T  16442075 cactctttaaagattctaaaagaataaattagtttataaaaaagtcaaacattttgattttcaaaatattgattacacatgttttcatacaaagttacta 16442174  T
Q  216 tttaaaggccttaa 229  Q
    | |||||| |||||    
T  16442175 tataaaggtcttaa 16442188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 8176324 - 8176419
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 214  Q
    ||||||| ||||||||||||| |||| | ||| ||| ||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  8176324 tctttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgatgcattaattacacatattttcataataagttact 8176419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 12307821 - 12307904
Alignment:
Q  117 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    ||||||||| ||||  ||||||| |||||||||||||| ||||||||||||||  ||| || || |||| ||||||||||||||    
T  12307821 actctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattacacatatttt 12307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 31702874 - 31702747
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| ||||  |||| | ||||||||||  |||  ||||||| |||||||||||||| ||||| || |||||  |||    ||||||||||||    
T  31702874 gtcttgttaacgagtg--tccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgatta 31702777  T
Q  191 cacatattttcatgataagttactatttaa 220  Q
    |||||||||| || | ||||||||||||||    
T  31702776 cacatatttttataaaaagttactatttaa 31702747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 7465451 - 7465558
Alignment:
Q  94 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 193  Q
    |||||||| |||||| ||| | |||| ||||| |||||| |||||| ||||| ||  |||| ||||||||||||||| |||  ||||||||||||||||     
T  7465451 ttgttaacgagtgcccccggg-cactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacat 7465549  T
Q  194 atattttca 202  Q
    | |||||||    
T  7465550 aaattttca 7465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 22695549 - 22695473
Alignment:
Q  160 tcaaatatttcgattctcgatgcattgattacacata-ttttcatgataagttactatttaaaggccttaactagtg 235  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| || | ||||||| ||||||| |||||||| ||||    
T  22695549 tcaaatatttcaattttcgatgcattgattacacatatttttaataaaaagttaccatttaaaagccttaacgagtg 22695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 22696071 - 22696000
Alignment:
Q  92 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaa 163  Q
    |||||||||| |||||||| ||  |||||||||| ||||| ||||||| |||||||||||||| ||| ||||    
T  22696071 tcttgttaacgagtgcctctgatgcactctttaaggattccaaaagaagaaattattttataaaaaaatcaa 22696000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 35241410 - 35241509
Alignment:
Q  120 ctttaaagattctaaaagaataaattattttataata-aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 218  Q
    |||||| |||| ||||| || |||||||||||||| | || | |||||||| ||||   ||||||||||||| ||||||||| |||||||||||| ||||    
T  35241410 ctttaaggattttaaaaaaagaaattattttataaaagaaattaaatattttgatttctgatgcattgattatacatatttttatgataagttaccattt 35241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 6048381 - 6048268
Alignment:
Q  116 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 215  Q
    ||||||||||| |||||||||||| |||||| ||||||| ||||| ||| ||||  |||  | |   ||||||||||||| |||||||   |||||||||    
T  6048381 cactctttaaaaattctaaaagaagaaattaatttataaaaaagtgaaacattttaatttccaagatattgattacacatgttttcatacaaagttacta 6048282  T
Q  216 tttaaaggccttaa 229  Q
    | |||||| |||||    
T  6048281 tataaaggtcttaa 6048268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 26311807 - 26311889
Alignment:
Q  119 tctttaaagattctaaaagaataaattattttataataa-agtcaaatatttcgattctcgatgcattgattacacatatttt 200  Q
    ||||||| |||||| ||||||||||||| ||||||| ||  || |||||||| |||| || || |||| ||||||||||||||    
T  26311807 tctttaaggattctgaaagaataaattaatttataaaaatggttaaatattttgattttcaatacattaattacacatatttt 26311889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 30509286 - 30509387
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||||||| |||| |||||  |||||||||||  || | |||| ||  ||||||| | ||| ||| ||||| ||||||||| || ||||||||||||    
T  30509286 gtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgatta 30509385  T
Q  191 ca 192  Q
    ||    
T  30509386 ca 30509387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 18245 - 18144
Alignment:
Q  91 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 190  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  18245 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 18146  T
Q  191 ca 192  Q
    ||    
T  18145 ca 18144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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