View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_426 (Length: 247)
Name: NF10481A_low_426
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_426 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 3686201 - 3685958
Alignment:
| Q |
1 |
agcaagtaacctctttcttttttcttttcgccctaacataactgtcatattttatttctagtactgctatttatcaagaacacacctcataacgatcttc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686201 |
agcaagtaaccactttcttttttcttttctccctaacataactgtcatattttttttctagtactgctatttatcaagaacacacctcataacgatcttc |
3686102 |
T |
|
| Q |
101 |
ccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcactta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3686101 |
ccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttaaaagaaccaatcactta |
3686002 |
T |
|
| Q |
201 |
ctgccacatcagttcgcgatgcgttcgtgatctatattcttcga |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686001 |
ctgccacatcagttcgcgatgcgttcgtgatctatattcttcga |
3685958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 3693925 - 3693725
Alignment:
| Q |
44 |
gtcatattttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgta |
143 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
3693925 |
gtcatattttatttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgta |
3693826 |
T |
|
| Q |
144 |
tagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttc |
242 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
3693825 |
tggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatattcttc |
3693726 |
T |
|
| Q |
243 |
g |
243 |
Q |
| |
|
| |
|
|
| T |
3693725 |
g |
3693725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 3679409 - 3679213
Alignment:
| Q |
37 |
cataactgtcatatttt-atttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaa |
128 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || || |||||||| || |
|
|
| T |
3679409 |
cataactgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
3679310 |
T |
|
| Q |
129 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
225 |
Q |
| |
|
| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||| |||||||| |
|
|
| T |
3679309 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 3675716 - 3675532
Alignment:
| Q |
49 |
attttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagtt |
148 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3675716 |
attttatttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagtt |
3675617 |
T |
|
| Q |
149 |
catgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcg |
243 |
Q |
| |
|
| |||||||||||||| |||| ||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
3675616 |
ctggaatgagcggaaatgacagcacgtaagtgttata----------acttataaccacatcagtttgtgatgcgttcgtgatctatattcttcg |
3675532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University