View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_427 (Length: 247)
Name: NF10481A_low_427
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_427 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 14113089 - 14112880
Alignment:
| Q |
7 |
tttggtgttgcaagcagaccttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactgat |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14113089 |
tttggtgttgcaagcagaccttgtttgttcaaaagaggctgttaggtgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactgat |
14112990 |
T |
|
| Q |
107 |
gtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcgacc |
206 |
Q |
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|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14112989 |
gtgtatgacaacatgctgtcatcttggaggacagaagattgctgccaatggaagggaattggttgcagcaacgtcacttgtcatgtaattatgctcgacc |
14112890 |
T |
|
| Q |
207 |
ttcatggtaa |
216 |
Q |
| |
|
|||||||||| |
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|
| T |
14112889 |
ttcatggtaa |
14112880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 13860464 - 13860681
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttac |
102 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13860464 |
gtttggtgttgcaagctgaccagcttgtttgttcaaaagagtttgttaggtgcatacaaagtgagaggcaggcgcttctacaattcaaggctggccttac |
13860563 |
T |
|
| Q |
103 |
tgatgtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctc |
202 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13860564 |
tgatgtgtatgacaacatgctgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcagcaacgtaactggtcatgtaattatgctc |
13860663 |
T |
|
| Q |
203 |
gaccttcatggtaattat |
220 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
13860664 |
gaccttcatggtaattat |
13860681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 13943571 - 13943376
Alignment:
| Q |
26 |
cttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactgatgtgtatgacaacatgctgt |
125 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
13943571 |
cttgtttgttcaaaagaggttgttaggtgcatacaaagtgagaggcaagcacttctacaattcaaagctggccttattgatgaatatgacaacatgctgt |
13943472 |
T |
|
| Q |
126 |
catcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcgaccttcatggtaattatg |
221 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13943471 |
catcttggacgacagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcgaccttcatggtaattatg |
13943376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 13470373 - 13470577
Alignment:
| Q |
6 |
gtttggtgttgcaagcagaccttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactga |
105 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| | ||| || ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |
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|
| T |
13470373 |
gtttggtgttgcaagcatattttgtttgttcaaaaaaagttgtcaggtgcatacaaagtgagaggcaggcacttcttcaattcaaggctgcccttattga |
13470472 |
T |
|
| Q |
106 |
tgtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcgac |
205 |
Q |
| |
|
|| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || |
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| T |
13470473 |
tgactatg---gcatgttgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcagcaacctcactgatcatgtaattatgctcaac |
13470569 |
T |
|
| Q |
206 |
cttcatgg |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
13470570 |
cttcatgg |
13470577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 13890458 - 13890662
Alignment:
| Q |
7 |
tttggtgttgcaagcagaccttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactgat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||| |
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|
| T |
13890458 |
tttggtgttgcaagcagaccttgtttgttcaaaagaggttgttaaatgcattcaaagtgagaggcatgcacttcttcaattcaaggctggtcttaccgat |
13890557 |
T |
|
| Q |
107 |
gtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcgacc |
206 |
Q |
| |
|
| |||| |||| |||||||||||||| | | |||||||||| ||||| | |||||||||||||||||| |||||||||||||| ||| |||||||| |
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|
| T |
13890558 |
gaatatg---gcatgttgtcatcttggacgacggcagattgctgcgaatggtatggaattggttgcagcaacctcactggtcatgtacttaagctcgacc |
13890654 |
T |
|
| Q |
207 |
ttcatggt |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
13890655 |
ttcatggt |
13890662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 14087238 - 14087024
Alignment:
| Q |
7 |
tttggtgttgcaagcagacc---ttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttact |
103 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| || |||||| |||||||||||||||||| |||||||| ||||| ||||||| ||||||| |
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|
| T |
14087238 |
tttggtgttgcaagtagaccagcttgtttgttcaaaagaggttgttaggtgcatacaaagtgagaggacagcacttcttcaatttaaggctgcccttact |
14087139 |
T |
|
| Q |
104 |
gatgtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcg |
203 |
Q |
| |
|
||| |||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||| |
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|
| T |
14087138 |
gatccatatggca---tgctgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcaacaacctcactggccatgtacttatgctca |
14087042 |
T |
|
| Q |
204 |
accttcatggtaattatg |
221 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14087041 |
accttcatggtaattatg |
14087024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 13872601 - 13872812
Alignment:
| Q |
6 |
gtttggtgttgcaagcagaccttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactga |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||||| || |||||||||||||||||| ||| |
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|
| T |
13872601 |
gtttggcgttgcaagcagaccttgtttgttcaaaagaggttgttaggtgcatacaaagtgagagacaggcactccttaaattcaaggctggccttattga |
13872700 |
T |
|
| Q |
106 |
tgtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcgac |
205 |
Q |
| |
|
|||| ||| |||| ||||||||||||| | | |||||||||||||||| | |||||| ||||||||||| ||||||| |||||| |||||||||| |
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|
| T |
13872701 |
tgtgaatg---gcatgttgtcatcttggacaacggcagattgctgccaatggtatggaattcgttgcagcaacctcactggccatgtacttatgctcgat |
13872797 |
T |
|
| Q |
206 |
cttcatggtaattat |
220 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
13872798 |
cttcatggtgattat |
13872812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 14017656 - 14017442
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttac |
102 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||||| || ||||||||| || |||||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
14017656 |
gtttggtgtttcaagcagaccaacttatttgttcaaaagaggttgttagatgtattcaaagtgagaggaaggcacttctacagttcaagtatggccttgt |
14017557 |
T |
|
| Q |
103 |
tgatgtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctc |
202 |
Q |
| |
|
||||| || || || || ||||||||||||| |||||||||||||| ||||| | |||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
14017556 |
tgatgagtttggca---tgttgtcatcttggacaacagaagattgctgcgaatggtatggaattggttgcagcaacctcactggtcatgtacttatgctc |
14017460 |
T |
|
| Q |
203 |
gaccttcatggtaattat |
220 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
14017459 |
aaccttcatggtgattat |
14017442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 14049484 - 14049270
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttac |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| || ||| || ||||||||||||||||| ||||||||||| ||||||||| ||||||||| |
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|
| T |
14049484 |
gtttggtgttgcaagcagaccagcttgtttgctcaaaagaggttgtcaggtgcatacaaagtgagagacaggcacttctgcaattcaagtctggccttat |
14049385 |
T |
|
| Q |
103 |
tgatgtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctc |
202 |
Q |
| |
|
||||| | || ||||| |||||| |||||| | |||||||||||||||||| | ||||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
14049384 |
tgatgaatttg---acatgttgtcattttggacaactgaagattgctgccaatggtatggaattggttgcagcaatatcactggccatgtacttatgctc |
14049288 |
T |
|
| Q |
203 |
gaccttcatggtaattat |
220 |
Q |
| |
|
|| ||||||||| ||||| |
|
|
| T |
14049287 |
gatcttcatggtgattat |
14049270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 14027697 - 14027483
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttac |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
14027697 |
gtttggtgttgcaagcagaccagtttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcactcctgcaattcaagtttggccttgt |
14027598 |
T |
|
| Q |
103 |
tgatgtgtatgacaacatgctgtcatcttggacggcagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctc |
202 |
Q |
| |
|
||| | || || || ||||||||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
14027597 |
tgacaaatttggca---tgttgtcatcttggacaacagaagattgctgcgaatggtatggaattggttgcagcaatatcactggccatgtacttatgctc |
14027501 |
T |
|
| Q |
203 |
gaccttcatggtaattat |
220 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
14027500 |
gaccttcatggtgattat |
14027483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 14000530 - 14000429
Alignment:
| Q |
6 |
gtttggtgttgcaagcagaccttgtttgttcaaaaggggctgttagatgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactga |
105 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| | || ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| ||| |
|
|
| T |
14000530 |
gtttggtgttgcaagcagactttgtttattcaaaggaggttgttagatgcatacaaagtgagaggaaagcacttcttcaattcaaggctggccttattga |
14000431 |
T |
|
| Q |
106 |
tg |
107 |
Q |
| |
|
|| |
|
|
| T |
14000430 |
tg |
14000429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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