View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_429 (Length: 247)
Name: NF10481A_low_429
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_429 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 17536533 - 17536305
Alignment:
| Q |
4 |
atggacatcaaacaagcaacaagttgttactttatccacaaccgaagtggagttcatagctgcagcaacttcagcatgccaagcaatttggctaagaaga |
103 |
Q |
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| T |
17536533 |
atgggcatcaaagaagcaacaagttgttactttatccacaactgaagcggagttcatagctgcagcaacttcagcatgccaagcaatttggctaagaaga |
17536434 |
T |
|
| Q |
104 |
attcttgaagagttacatttttatcaagagaggccaactgtgattcactgtgataatagttcaactatcaaactctccaagaacccagttttacatagga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17536433 |
attcttgaagagttacatttttatcaagagaggccaactgtgattcactgtgataatagttcaactatcaaactctccaagaacccagttttacatggga |
17536334 |
T |
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| Q |
204 |
gaagtaaacacatagatgtgcgatatcat |
232 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17536333 |
gaagtaaacacatagatgtgcgatatcat |
17536305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 45825467 - 45825239
Alignment:
| Q |
4 |
atggacatcaaacaagcaacaagttgttactttatccacaaccgaagtggagttcatagctgcagcaacttcagcatgccaagcaatttggctaagaaga |
103 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45825467 |
atgggcatcaaagaagcaacaagttgttactttatccacaactgaagcggagttcatagctgcagcaacttcagcatgccaagcaatttggctaagaaga |
45825368 |
T |
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| Q |
104 |
attcttgaagagttacatttttatcaagagaggccaactgtgattcactgtgataatagttcaactatcaaactctccaagaacccagttttacatagga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45825367 |
attcttgaagagttacatttttatcaagagaggccaactgtgattcactgtgataatagttcaactatcaaactctccaagaacccagttttacatggga |
45825268 |
T |
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| Q |
204 |
gaagtaaacacatagatgtgcgatatcat |
232 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45825267 |
gaagtaaacacatagatgtgcgatatcat |
45825239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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