View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_435 (Length: 245)
Name: NF10481A_low_435
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_435 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47886226 - 47886463
Alignment:
| Q |
1 |
taatttgcgattatttgttaatggcagtagcaaaataacacttatgttgcagtgcaatgagttctcattgaatgacggtgtaaaactaaattatactaac |
100 |
Q |
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| T |
47886226 |
taatttgcgattattttttaatggcagtagcaaaataacgcttatgttgcagtgccatgagttctcattgaatgacggtgtaaaactaaattatactaac |
47886325 |
T |
|
| Q |
101 |
ggtgcatctccattaatgtcatagaataaacatagattttatcatgttaccttgtctgtctgctcgcataaatatctaaaccttgccagcctatcgacag |
200 |
Q |
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| T |
47886326 |
ggtgcatctccattaatgtcatagaataaacatagattttatcatgttaccttctctgtctgctcgcataaatatctaaaccttgccagcctatcgacag |
47886425 |
T |
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| Q |
201 |
gaaaaatttgaagtccagcaaccattaagtcaacacca |
238 |
Q |
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| T |
47886426 |
gaaaaatttgaagtccagcaaccattaagtcaacacca |
47886463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 4622864 - 4622770
Alignment:
| Q |
144 |
atgttaccttgtctgtctgctcgcataaatatctaaaccttgccagcctatcgacaggaaaaatttgaagtccagcaaccattaagtcaacacca |
238 |
Q |
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| T |
4622864 |
atgtcaccttgtctgtctgcatctttaaatatctaaatcttgcatgtctatcaacagggaaaatttgaagtccggcaaccattaagtctacacca |
4622770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 18359356 - 18359388
Alignment:
| Q |
57 |
atgagttctcattgaatgacggtgtaaaactaa |
89 |
Q |
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| T |
18359356 |
atgagttctcattgaatgtcggtgtaaaactaa |
18359388 |
T |
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