View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_440 (Length: 245)
Name: NF10481A_low_440
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_440 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 6236342 - 6236580
Alignment:
| Q |
5 |
atatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
104 |
Q |
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| T |
6236342 |
atatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
6236441 |
T |
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| Q |
105 |
aaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaaggtctac |
204 |
Q |
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| T |
6236442 |
aaaacctaggtgataggtgaaaatctaattttttttttttt--atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtctac |
6236539 |
T |
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| Q |
205 |
atcaggaagaaacaaaaacagaaaaggcagaattacatcaa |
245 |
Q |
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| T |
6236540 |
atcaggaagaaacaaaaatagaaaaggcagaattacatcaa |
6236580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
27 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
126 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
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| Q |
127 |
atctaa |
132 |
Q |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
27 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
126 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
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| Q |
127 |
atctaa |
132 |
Q |
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|||||| |
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| T |
33952436 |
atctaa |
33952441 |
T |
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