View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_441 (Length: 245)

Name: NF10481A_low_441
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_441
NF10481A_low_441
[»] chr8 (6 HSPs)
chr8 (16-227)||(27316633-27316843)
chr8 (94-176)||(43408522-43408603)
chr8 (95-190)||(41470062-41470157)
chr8 (145-187)||(10424440-10424482)
chr8 (124-186)||(13895967-13896029)
chr8 (63-176)||(38288898-38289011)
[»] chr3 (10 HSPs)
chr3 (53-212)||(37083781-37083941)
chr3 (95-176)||(36879066-36879147)
chr3 (95-176)||(38684784-38684865)
chr3 (128-183)||(29296776-29296831)
chr3 (114-176)||(9198207-9198269)
chr3 (130-207)||(20873187-20873264)
chr3 (108-201)||(53751473-53751566)
chr3 (124-188)||(21366442-21366506)
chr3 (124-176)||(31466024-31466076)
chr3 (96-172)||(44560161-44560237)
[»] chr2 (5 HSPs)
chr2 (120-189)||(12359865-12359934)
chr2 (114-176)||(27679068-27679130)
chr2 (124-212)||(40909918-40910006)
chr2 (60-219)||(42139326-42139484)
chr2 (120-184)||(3841107-3841171)
[»] chr1 (6 HSPs)
chr1 (98-189)||(5951851-5951942)
chr1 (125-215)||(31117709-31117799)
chr1 (95-176)||(35058567-35058648)
chr1 (116-176)||(1415733-1415793)
chr1 (96-213)||(22593622-22593740)
chr1 (115-188)||(42747603-42747676)
[»] chr6 (3 HSPs)
chr6 (94-176)||(9618506-9618588)
chr6 (109-188)||(33757778-33757857)
chr6 (145-190)||(9749953-9749998)
[»] chr4 (11 HSPs)
chr4 (94-176)||(39276330-39276412)
chr4 (53-214)||(52831389-52831550)
chr4 (97-207)||(21501595-21501704)
chr4 (120-176)||(50570376-50570432)
chr4 (119-189)||(3535168-3535238)
chr4 (128-190)||(33889355-33889417)
chr4 (60-207)||(20988802-20988950)
chr4 (124-200)||(31736137-31736213)
chr4 (78-140)||(13615271-13615332)
chr4 (53-158)||(31235522-31235625)
chr4 (96-176)||(23051683-23051763)
[»] chr7 (9 HSPs)
chr7 (124-205)||(26769193-26769274)
chr7 (135-219)||(13438415-13438499)
chr7 (63-176)||(18654709-18654822)
chr7 (114-158)||(43911240-43911284)
chr7 (114-177)||(44235512-44235575)
chr7 (117-183)||(883739-883805)
chr7 (117-183)||(1243068-1243134)
chr7 (98-176)||(18654127-18654205)
chr7 (120-189)||(28175590-28175659)
[»] chr5 (8 HSPs)
chr5 (97-212)||(16869929-16870044)
chr5 (123-184)||(25618282-25618343)
chr5 (96-176)||(34639762-34639842)
chr5 (123-184)||(25617620-25617681)
chr5 (96-212)||(1621533-1621649)
chr5 (114-218)||(29226037-29226140)
chr5 (121-212)||(19461787-19461878)
chr5 (118-158)||(1298110-1298150)
[»] scaffold0040 (1 HSPs)
scaffold0040 (95-212)||(49883-50000)
[»] scaffold0010 (1 HSPs)
scaffold0010 (116-156)||(166589-166629)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 27316843 - 27316633
Alignment:
Q  16 acatcatgagtctgtttgataaaacacttttttaattttatagtttatgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtc 115  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| ||    
T  27316843 acatcatgaatctgtttggtaaaacacttttttgattttatagtttatgtcttataacctcatatgattagaaaaggt-cgtttggtaataatcattctc 27316745  T
Q  116 tcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaatttgaccccta 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  27316744 tcacgagtttatatcttatttttattagcttatagcattttttggtaagttaattcaagtagtttatagcttataatattttatcacaatttgaccccta 27316645  T
Q  216 taattttagttg 227  Q
    ||||||||||||    
T  27316644 taattttagttg 27316633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 43408522 - 43408603
Alignment:
Q  94 tcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    |||||||||||| |||||| ||||| ||| |||||||||||||| | ||| | |||||| |||||| |||| |||||||||||    
T  43408522 tcgtttggtaaccatcattttctcatgagcttataacttattttcactagataatagca-tttttgataagctaattcaagta 43408603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 41470062 - 41470157
Alignment:
Q  95 cgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttata 190  Q
    |||||||||||  ||||| ||||||||| |||||||||| ||||| ||||| ||||  ||||||  |||| ||| |||||||  ||||| ||||||    
T  41470062 cgtttggtaactgtcattttctcacgagcttataacttaattttactagctcatagtgtttttttataagctaactcaagtagcttatagcttata 41470157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 10424440 - 10424482
Alignment:
Q  145 ttatagcattttttggtaagttaattcaagtaatttataactt 187  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||    
T  10424440 ttatagcatttttgggtaagttagttcaagtagtttataactt 10424482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 13896029 - 13895967
Alignment:
Q  124 ttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataact 186  Q
    |||||||||||||| || || ||||||   |||||| ||||||||||||||||| ||||||||    
T  13896029 ttataacttattttcatgagtttatagttgtttttgataagttaattcaagtaacttataact 13895967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 38289011 - 38288898
Alignment:
Q  63 tgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggta 162  Q
    |||||||||| || || ||| || ||||  ||||||| |||||||||||| | ||| ||| |||||  |||||||||| |||||||| |  ||| || ||    
T  38289011 tgtcttataagcttatttgactaaaaaaaattcgtttcgtaacaatcattttttcatgagcttatagattatttttataagcttataactgtttgtgata 38288912  T
Q  163 agttaattcaagta 176  Q
    || |||||||||||    
T  38288911 agctaattcaagta 38288898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 37083781 - 37083941
Alignment:
Q  53 ttatagtttatgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagca 152  Q
    |||||| ||||||||||||| ||||| |||||| ||||    |||| ||||||  ||| | ||||||||| ||||| |||||||||| ||||||||||||    
T  37083781 ttatagcttatgtcttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagcttatagca 37083880  T
Q  153 ttttttggtaagttaattcaagtaatttataacttataata-ttttatcacaatttgaccc 212  Q
     |||||  |||| |||||||||||  ||||| ||||| ||| |||||||||||||| ||||    
T  37083881 atttttaataagctaattcaagtagcttatagcttatcatatttttatcacaattttaccc 37083941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 36879147 - 36879066
Alignment:
Q  95 cgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    |||||||||||  ||| | ||||| | | |||||||||||||||| ||||||||||||||||||  |||| |||||||||||    
T  36879147 cgtttggtaactgtcactttctcatgggattataacttatttttactagcttatagcatttttttataagctaattcaagta 36879066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 38684865 - 38684784
Alignment:
Q  95 cgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    |||||||||||  ||||| ||||| ||| || ||| ||||||||| ||||||||||| ||||||| |||| |||||||||||    
T  38684865 cgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagctaattcaagta 38684784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 29296831 - 29296776
Alignment:
Q  128 aacttatttttattagcttatagcattttttggtaagttaattcaagtaatttata 183  Q
    ||||||||||||| | |||||||||||| ||| ||||||||||||| || ||||||    
T  29296831 aacttatttttataatcttatagcatttattgataagttaattcaaatagtttata 29296776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 9198269 - 9198207
Alignment:
Q  114 tctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    ||||||||| ||| | |||||||||| |||||||||||  |||||| |||| |||||||||||    
T  9198269 tctcacgagcttaaagcttatttttactagcttatagcggtttttgataagctaattcaagta 9198207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 20873264 - 20873187
Alignment:
Q  130 cttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaattt 207  Q
    |||||||||| ||||||||||   |||||| |||| |||||||||||| ||||| ||||| ||  |||||| ||||||    
T  20873264 cttatttttactagcttatagtggtttttgataagctaattcaagtaacttatagcttatcattatttatcccaattt 20873187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 53751473 - 53751566
Alignment:
Q  108 tcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatca 201  Q
    ||||| ||||||||||||||| ||||||| ||||| ||||||   | ||||  |||||||||| |||||| ||| ||||||  |||| ||||||    
T  53751473 tcattttctcacgagtttatagcttatttatattaacttatactgtatttttataagttaatttaagtaacttaaaacttactatatgttatca 53751566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 21366442 - 21366506
Alignment:
Q  124 ttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataactta 188  Q
    ||||||||||||||||  | ||| || | |||||||  |||||||||||||||| ||||||||||    
T  21366442 ttataacttatttttaccaacttgtaacgttttttgacaagttaattcaagtaacttataactta 21366506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 31466076 - 31466024
Alignment:
Q  124 ttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    ||||| |||||||||| ||||||||||  ||||||| ||| ||||||||||||    
T  31466076 ttatatcttatttttactagcttatagtgttttttgataatttaattcaagta 31466024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 44560161 - 44560237
Alignment:
Q  96 gtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattca 172  Q
    ||||||||||  ||||| |||||||||||||||| ||||||||| || | || ||  ||||||| |||| |||||||    
T  44560161 gtttggtaaccgtcattttctcacgagtttataatttatttttactatcctaaagtgttttttgataagctaattca 44560237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 12359934 - 12359865
Alignment:
Q  120 gagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttat 189  Q
    |||||||||  ||||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  12359934 gagtttataggttatttttactagcttataacattttttgataagttaattcaagtagtttataacttat 12359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 27679068 - 27679130
Alignment:
Q  114 tctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    ||||||||| ||||| |||||||||| ||||||||||| ||||||  |||| |||||||||||    
T  27679068 tctcacgagcttatagcttatttttactagcttatagcgttttttaataagctaattcaagta 27679130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 40909918 - 40910006
Alignment:
Q  124 ttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaatttgaccc 212  Q
    |||||||||||||| || |||||||| | ||||||| |||| ||||||||||| ||||||  |||| |  ||||||| |||||| ||||    
T  40909918 ttataacttattttcatgagcttataacgttttttgataagctaattcaagtagtttataggttatcactttttatctcaattttaccc 40910006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 42139326 - 42139484
Alignment:
Q  60 ttatgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttg 159  Q
    ||||||||||||| ||||| ||| || |||||    |||||||||   ||| | |||||| || ||||| ||||||||||||||||||||||   |||||    
T  42139326 ttatgtcttataagctcatttgactaaaaaatacatgtttggtaattgtcactttctcacaagcttatagcttatttttattagcttatagc-ggttttg 42139424  T
Q  160 gtaagttaattcaagtaatttataacttataatattttatcacaatttgacccctataat 219  Q
      ||| |||||||||||  ||||| ||||| ||  |||||| |||||| |||||| ||||    
T  42139425 tcaagctaattcaagtagattatagcttatcattatttatctcaattttacccctctaat 42139484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 3841171 - 3841107
Alignment:
Q  120 gagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataa 184  Q
    ||||||||| ||||||||||  |||||| |  |||||||| ||||||||||||  ||||||||||    
T  3841171 gagtttatagcttatttttacaagcttaaaagattttttgataagttaattcagataatttataa 3841107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 5951942 - 5951851
Alignment:
Q  98 ttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttat 189  Q
    ||||||||||||||| ||||||||  ||||| ||||||||||| ||||||||||  |||  | |||| |||||||| |||||||||||||||    
T  5951942 ttggtaacaatcattctctcacgatcttatagcttatttttatgagcttatagcggtttgagataagctaattcaaataatttataacttat 5951851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 31117799 - 31117709
Alignment:
Q  125 tataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaatttgaccccta 215  Q
    ||||||||| |||||| |||||||||| ||||||| |||| |||||||||||  ||||| | ||| |  ||||||| |||||| |||||||    
T  31117799 tataacttaattttatgagcttatagctttttttgataagataattcaagtagcttatagcctatcaatttttatctcaattttaccccta 31117709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 35058567 - 35058648
Alignment:
Q  95 cgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    |||||||||||| |||||  |||||||| ||||| ||||||||||   |||||||||  ||||| ||||| |||||||||||    
T  35058567 cgtttggtaacagtcatttgctcacgagcttatagcttatttttacgggcttatagcggtttttagtaagctaattcaagta 35058648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 1415733 - 1415793
Alignment:
Q  116 tcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    ||||||| ||||| |||||||||||||  ||||||| ||||||| |||| |||||||||||    
T  1415733 tcacgagcttatagcttatttttattaatttatagcgttttttgataagctaattcaagta 1415793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 22593740 - 22593622
Alignment:
Q  96 gtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagca-ttttttggtaagttaattcaagtaatttataacttataatat 194  Q
    ||||||||||  ||| | |||||||||  | || ||||||||||| ||||||||||| ||||| | |||| |||||||||||  ||||| ||||| || |    
T  22593740 gtttggtaaccgtcactttctcacgagcctgtagcttatttttatcagcttatagcagtttttcgataagctaattcaagtagcttatagcttatcattt 22593641  T
Q  195 tttatcacaatttgacccc 213  Q
    ||||||  ||||| |||||    
T  22593640 tttatcctaattttacccc 22593622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 42747603 - 42747676
Alignment:
Q  115 ctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataactta 188  Q
    ||||| || ||||| |||| |||||| |||||||||  ||||||  |||| |||||||||||| ||||||||||    
T  42747603 ctcacaagcttatagcttaattttatgagcttatagtgtttttttataagctaattcaagtaacttataactta 42747676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 9618588 - 9618506
Alignment:
Q  94 tcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    |||||||| |||||||||| ||||||||||||||| ||| ||||||  ||||||||| |||||||  |||| |||||||||||    
T  9618588 tcgtttggcaacaatcattttctcacgagtttatagcttgtttttacaagcttatagtatttttttataagctaattcaagta 9618506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 33757857 - 33757778
Alignment:
Q  109 cattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataactta 188  Q
    |||| ||||||||  ||||| ||||||||||| |  |||||||| ||| ||  |||||||||||||||||||||| ||||    
T  33757857 cattttctcacgaacttatagcttatttttatgaatttatagcagtttatgacaagttaattcaagtaatttatagctta 33757778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 9749998 - 9749953
Alignment:
Q  145 ttatagcattttttggtaagttaattcaagtaatttataacttata 190  Q
    ||||||| ||||||| ||||||||||||||||  ||||||||||||    
T  9749998 ttatagcgttttttgataagttaattcaagtaggttataacttata 9749953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 39276330 - 39276412
Alignment:
Q  94 tcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    ||||||| ||||  ||||| ||||||||| |||||||||||||||| ||||||||| | ||||||| |||| |||||||||||    
T  39276330 tcgtttgataactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagctaattcaagta 39276412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 52831389 - 52831550
Alignment:
Q  53 ttatagtttatgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagca 152  Q
    |||||||||||  ||||||| |||||||||||| ||||   | ||||||||||  ||||| |  |||||| || || |||||||| || ||||||||       
T  52831389 ttatagtttatagcttataagctcatatgattaaaaaaaacttgtttggtaacggtcatttttacacgagcttgtagcttattttcatgagcttataaag 52831488  T
Q  153 ttttttggtaagttaattcaagtaatttataacttataatattttatcacaatttgacccct 214  Q
     |||||| |||| |||||||||||  ||||| ||||| || ||||||| |||||||||||||    
T  52831489 gtttttgataagctaattcaagtagcttatagcttatcattttttatctcaatttgacccct 52831550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 21501595 - 21501704
Alignment:
Q  97 tttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattt 196  Q
    |||||||||  ||| | ||||||||| ||||| |||||||||| |||| |||||  ||||||| |||| |||||||||||  ||||| |||||||| |||    
T  21501595 tttggtaactgtcactttctcacgagcttatagcttatttttactagcatatagtgttttttgataagctaattcaagtagcttatagcttataat-ttt 21501693  T
Q  197 tatcacaattt 207  Q
    |||| ||||||    
T  21501694 tatcccaattt 21501704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 50570432 - 50570376
Alignment:
Q  120 gagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||| || ||||||||    
T  50570432 gagtttataacttatttttattagattataacattttttgataagctacttcaagta 50570376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 3535168 - 3535238
Alignment:
Q  119 cgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttat 189  Q
    |||||||||| |||||||||| || |||||||| ||||||| |||| |||||||||||  ||||| |||||    
T  3535168 cgagtttatagcttatttttactaacttatagcgttttttgataagctaattcaagtagcttatagcttat 3535238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 33889355 - 33889417
Alignment:
Q  128 aacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttata 190  Q
    |||||||||| |||||| |||| ||||||||  ||||||||||||||||  ||||||||||||    
T  33889355 aacttattttcattagcctataacatttttttataagttaattcaagtagcttataacttata 33889417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 20988950 - 20988802
Alignment:
Q  60 ttatgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtctcacgag-tttataacttatttttattagcttatagcatttttt 158  Q
    ||||||||||||| ||||| ||| || ||||    |||||||||||  ||| | ||||| ||| |||||| |||||||||| |  ||  |||||||||||    
T  20988950 ttatgtcttataagctcatttgactaaaaaagacacgtttggtaaccgtcactttctcatgagctttatagcttatttttactgactattagcatttttt 20988851  T
Q  159 ggtaagttaattcaagtaatttataacttataatattttatcacaattt 207  Q
    | |||| |||||||||||  ||||| ||||| || ||||||| ||||||    
T  20988850 gataagctaattcaagtagcttatagcttatcattttttatctcaattt 20988802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 31736213 - 31736137
Alignment:
Q  124 ttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatc 200  Q
    |||||||||||||| || |||||||| |  |||||  |||| ||||||||||| |||||| |||||||| |||||||    
T  31736213 ttataacttattttcatgagcttataacgattttttataagctaattcaagtagtttatagcttataattttttatc 31736137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 13615332 - 13615271
Alignment:
Q  78 tatgattagaaaatgttcgtttggtaacaatcattgtctcacgagtttataacttatttttat 140  Q
    ||||||||||||| || ||||| |||||  ||||| ||||||||||||||| |||||||||||    
T  13615332 tatgattagaaaaagt-cgtttagtaactgtcattttctcacgagtttataccttatttttat 13615271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 31235625 - 31235522
Alignment:
Q  53 ttatagtttatgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagca 152  Q
    |||||| |||||||||| || ||||| |||  | ||||||||  |||||||||  ||| | ||||||||| |||||  |||| |||||||||||||| ||    
T  31235625 ttatagcttatgtcttacaagctcatttgaccaaaaaatgtt--tttggtaaccgtcactttctcacgagcttatagattatctttattagcttatatca 31235528  T
Q  153 tttttt 158  Q
    ||||||    
T  31235527 tttttt 31235522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 23051763 - 23051683
Alignment:
Q  96 gtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    ||||||||||| ||| | ||||||||| ||| | ||||||||||| || |||||||  ||| || |||| |||||||||||    
T  23051763 gtttggtaacagtcactttctcacgagcttacagcttatttttatgagtttatagcggtttgtgataagctaattcaagta 23051683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 26769193 - 26769274
Alignment:
Q  124 ttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaat 205  Q
    ||||| ||| ||||||||| |||||||||||||||| |||||||||| ||||| ||||||| |||| ||  |||||||||||    
T  26769193 ttatagcttgtttttattaacttatagcattttttgataagttaattaaagtactttataatttatcattatttatcacaat 26769274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 13438499 - 13438415
Alignment:
Q  135 ttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaatttgacccctataat 219  Q
    ||||| |||| |||||| ||||||  |||| |||||||||||| ||||| ||||| ||||||||||||||||| |||||| ||||    
T  13438499 ttttactagcatatagcgtttttttataagataattcaagtaacttatagcttatcatattttatcacaattttacccctttaat 13438415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 18654822 - 18654709
Alignment:
Q  63 tgtcttataacctcatatgattagaaaatgttcgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggta 162  Q
    |||||||||| ||||| |||||| ||||  ||| |||| ||||  ||||| ||||| |||||||||  |||||||||| |||||||||   ||| || ||    
T  18654822 tgtcttataagctcatttgattaaaaaagattcctttgataacggtcattttctcatgagtttatagattatttttatgagcttatagttgtttgtgata 18654723  T
Q  163 agttaattcaagta 176  Q
    || |||||||||||    
T  18654722 agctaattcaagta 18654709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 43911284 - 43911240
Alignment:
Q  114 tctcacgagtttataacttatttttattagcttatagcatttttt 158  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||    
T  43911284 tctcacgagtttataacttatttttactagcttatggcatatttt 43911240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 44235575 - 44235512
Alignment:
Q  114 tctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaa 177  Q
    ||||| ||| ||||| |||||||| || |||||||||  ||||||| |||||||||||||||||    
T  44235575 tctcaagagcttatagcttattttaatgagcttatagtgttttttgataagttaattcaagtaa 44235512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 883739 - 883805
Alignment:
Q  117 cacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttata 183  Q
    |||||| |||||||||||||| || ||| ||||| | ||| || |||||||||||||||| ||||||    
T  883739 cacgagcttataacttattttcatgagcatatagaagtttctgataagttaattcaagtagtttata 883805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 1243068 - 1243134
Alignment:
Q  117 cacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttata 183  Q
    |||||| |||||||||||||| || ||| ||||| | ||| || |||||||||||||||| ||||||    
T  1243068 cacgagcttataacttattttcatgagcatatagaagtttctgataagttaattcaagtagtttata 1243134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 18654127 - 18654205
Alignment:
Q  98 ttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    ||||||||| ||||| | ||| |||||||||  |||||||||| ||||||||||  ||| || |||| |||||||||||    
T  18654127 ttggtaacagtcattttttcatgagtttatagattatttttataagcttatagctgtttctgataagctaattcaagta 18654205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 28175659 - 28175590
Alignment:
Q  120 gagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttat 189  Q
    ||||||||| ||||||||||| |||||||||| || |||| |||| ||| |||||||  ||||| |||||    
T  28175659 gagtttatagcttatttttatgagcttatagctttctttgataagctaactcaagtagcttatagcttat 28175590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 16870044 - 16869929
Alignment:
Q  97 tttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattt 196  Q
    ||||||| | |||| | ||||||||  ||||| |||||||||| ||||||||||| ||||||| |||| |||||||||||  ||||| ||||| || |||    
T  16870044 tttggtatctatcactttctcacgaacttataccttatttttactagcttatagcgttttttgataagctaattcaagtagcttatagcttatcattttt 16869945  T
Q  197 tatcacaatttgaccc 212  Q
    |||  |||||| ||||    
T  16869944 tatttcaattttaccc 16869929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 25618282 - 25618343
Alignment:
Q  123 tttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataa 184  Q
    |||||| |||||||||||||| ||| |||| ||||||  |||||||||||||||||||||||    
T  25618282 tttatagcttatttttattagtttagagcagtttttgaaaagttaattcaagtaatttataa 25618343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 34639762 - 34639842
Alignment:
Q  96 gtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagta 176  Q
    |||| |||||||||||| |||||| || ||||||||| |||||| ||  ||||||||| ||||| |||| |||||||||||    
T  34639762 gtttcgtaacaatcattttctcaccagcttataacttttttttagtatgttatagcatcttttgataagctaattcaagta 34639842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 25617620 - 25617681
Alignment:
Q  123 tttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataa 184  Q
    |||||| |||||||||||||| ||| |||| ||||||  |||||||||||| ||||||||||    
T  25617620 tttatagcttatttttattagtttagagcagtttttgaaaagttaattcaaataatttataa 25617681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1621649 - 1621533
Alignment:
Q  96 gtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatatt 195  Q
    ||||||||||  |||||  |||| ||| ||||| |||||||||||  |||| |||| ||||||| |||| |||||||||||  ||||| ||||| |  ||    
T  1621649 gtttggtaaccgtcatttcctcaagagcttatagcttatttttatgtgcttttagcgttttttgataagctaattcaagtagcttatagcttatcagttt 1621550  T
Q  196 ttatcacaatttgaccc 212  Q
    ||||| |||||| ||||    
T  1621549 ttatctcaattttaccc 1621533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 29226140 - 29226037
Alignment:
Q  114 tctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaatttgacccc 213  Q
    ||||||||||||||| |||||||||| || |||||| |||||| || |||| ||||| |||||  || |||||| | || ||||||| |||||| ||||     
T  29226140 tctcacgagtttatagcttatttttactaacttataacattttatgataaggtaattaaagtagcttgtaacttttgat-ttttatctcaattttaccct 29226042  T
Q  214 tataa 218  Q
    |||||    
T  29226041 tataa 29226037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 19461878 - 19461787
Alignment:
Q  121 agtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatattttatcacaatttgaccc 212  Q
    |||||||| |||||||||| ||||||||| | |  |||| |||| ||||||||| |  | |||||||||||| ||||||| |||||| ||||    
T  19461878 agtttataccttatttttactagcttataacttaatttgataagctaattcaagaagctgataacttataattttttatctcaattttaccc 19461787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 1298150 - 1298110
Alignment:
Q  118 acgagtttataacttatttttattagcttatagcatttttt 158  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  1298150 acgagtttataacttatttttattagtttataacatctttt 1298110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 50000 - 49883
Alignment:
Q  95 cgtttggtaacaatcattgtctcacgagtttataacttatttttattagcttatagcattttttggtaagttaattcaagtaatttataacttataatat 194  Q
    |||||||||||  ||| | ||||||||| ||||| ||||||||||  ||||||||||  ||| || |||| |||||||||||  ||||| ||||| |  |    
T  50000 cgtttggtaacggtcactttctcacgagcttatagcttatttttaagagcttatagcggtttgtgataagctaattcaagtagcttatagcttatcactt 49901  T
Q  195 tttatcacaatttgaccc 212  Q
    |||||| |||||| ||||    
T  49900 tttatctcaattttaccc 49883  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 166589 - 166629
Alignment:
Q  116 tcacgagtttataacttatttttattagcttatagcatttt 156  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  166589 tcacgagcttataacttatttttactagcttatagcgtttt 166629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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