View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_443 (Length: 245)
Name: NF10481A_low_443
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_443 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 3686449 - 3686268
Alignment:
| Q |
69 |
ttcttcttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtactatatatggtttatgccat------ |
162 |
Q |
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| T |
3686449 |
ttctttttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtattatatatggtttatgccttttgttc |
3686350 |
T |
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| Q |
163 |
atatcatc-gtttcatgtctatcttattattatcatcgtttcatgtcttagttagaagttacttcaaacaaattccatatct |
243 |
Q |
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| T |
3686349 |
attacatctgtttcatgtctatcttattattatcatcgtttcatgtcttagttagaagttacttcaaacaaattccatatct |
3686268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 3703388 - 3703314
Alignment:
| Q |
171 |
gtttcatgtctatcttattattatcatcgtttcatgtcttagttagaagttacttcaaacaaattccatatctag |
245 |
Q |
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| T |
3703388 |
gtttcatgcctatcttattgttatcatcatttcatgtcttagttacaagctacttcaaataaattccatatctag |
3703314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 3687028 - 3687100
Alignment:
| Q |
83 |
atcatcatttgaaagggatcttgtgcttttgttttct-aaattgttcttactatgttagtactatatatggtttat |
157 |
Q |
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| T |
3687028 |
atcatcatttgaaagggatcatgtgcttttcttttttaaaattgttcttactatgttag---tatatatggtttat |
3687100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 3675877 - 3675821
Alignment:
| Q |
187 |
attattatcatcgtttcatgtcttagttagaag-ttacttcaaacaaattccatatc |
242 |
Q |
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| T |
3675877 |
attattgtcatcatttcatgtcttagttagaagcttacttcaaataaattccatatc |
3675821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 3686502 - 3686472
Alignment:
| Q |
22 |
agggggatagcaagatcgtaaaacaaagttg |
52 |
Q |
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| T |
3686502 |
agggggatagcaagatcgtaaaacaaagttg |
3686472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 41979749 - 41979687
Alignment:
| Q |
82 |
tatcatcatttgaa---agggatcttgtgcttttgttttctaaattgttcttactatgttagt |
141 |
Q |
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| T |
41979749 |
tatcatcatttgaatgaagggatcaggtgcatttgtttattaaattgttcttactatgttagt |
41979687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 4432462 - 4432410
Alignment:
| Q |
86 |
atcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgtt |
138 |
Q |
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| T |
4432462 |
atcatttgaaggggatcatgtgaattggctttctaaattgttcttactatgtt |
4432410 |
T |
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