View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_444 (Length: 245)
Name: NF10481A_low_444
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_444 |
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| [»] scaffold1583 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold1583 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 637 - 764
Alignment:
| Q |
118 |
agatctacaccatggccagaactaaaggaaaagccaaaagagccagaacaccatcgccaccgccttcaccatggtcaccttctcctcctccaccaccttc |
217 |
Q |
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| T |
637 |
agatccacaccatggccagaaccaaaggaaaagccaaaagagcgagaacaccatcgccaccgccttcaccatggtcaccttctcctcctccaccaccttc |
736 |
T |
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| Q |
218 |
tccacctgacctgaacaaaacaccacca |
245 |
Q |
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| T |
737 |
tccaccagacctaaacaaaacaccacca |
764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1583; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 520 - 574
Alignment:
| Q |
1 |
gcccttctctctcttctcctacgtttctcactccctccttcttcaagaaaagaag |
55 |
Q |
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| T |
520 |
gcccttctctctcttctcctacgtatctcactccctacttcttcaagaaaagaag |
574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 12921596 - 12921721
Alignment:
| Q |
118 |
agatctacaccatggccagaactaaaggaaaagccaaaagagccagaacaccatcgccaccgccttcaccatggtcaccttctcctcctccaccaccttc |
217 |
Q |
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| T |
12921596 |
agatctacaccatggccagaaccaaaggaaaagccaaaagagccagaacaccatc--caccgccttcaccgtggtcaccttctcctcctccaccaccttc |
12921693 |
T |
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| Q |
218 |
tccacctgacctgaacaaaacaccacca |
245 |
Q |
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| T |
12921694 |
tccacctgacctaaacaaaacaccacca |
12921721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12921481 - 12921534
Alignment:
| Q |
1 |
gcccttctctctcttctcctacgtttctcactccctccttcttcaagaaaagaag |
55 |
Q |
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| T |
12921481 |
gcccttctctctcttctcatacgtatctgactccctacttcttc-agaaaagaag |
12921534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 14638772 - 14638645
Alignment:
| Q |
118 |
agatctacaccatggccagaactaaaggaaaagccaaaagagccagaacaccatcgccaccgccttcaccatggtcaccttctcctcctccaccaccttc |
217 |
Q |
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| T |
14638772 |
agatccacaccatggccagaaccaaaggaaaagccaaaagagccagaacaccatcgccaccaccttcaccacggtcacattctcctcctccaccaccttc |
14638673 |
T |
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| Q |
218 |
tccacctgacctgaacaaaacaccacca |
245 |
Q |
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| T |
14638672 |
tccaccagacctgaacaaaacaccacca |
14638645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14638892 - 14638838
Alignment:
| Q |
1 |
gcccttctctctcttctcctacgtttctcactccctccttcttcaagaaaagaag |
55 |
Q |
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|||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
14638892 |
gcccttctctttcttctcctacgtatctcactccccacttcttcaagaaaagaag |
14638838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 14276050 - 14275927
Alignment:
| Q |
118 |
agatctacaccatggccagaactaaaggaaaagccaaaagagccagaacaccatcgccaccgccttcaccatggtcaccttctcctcctccaccaccttc |
217 |
Q |
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| T |
14276050 |
agatccacaccatggccagaaccaaaggaaaagccaaaagagccaaaacaccatcgccaccgccttcaccatggtcactgtctcctcctccaccaccttc |
14275951 |
T |
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| Q |
218 |
tccacctgacctgaacaaaacacc |
241 |
Q |
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| T |
14275950 |
tccacctgacctaaacaaaacacc |
14275927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14276167 - 14276113
Alignment:
| Q |
1 |
gcccttctctctcttctcctacgtttctcactccctccttcttcaagaaaagaag |
55 |
Q |
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| T |
14276167 |
gcccttctctctcttctcctacgtatctcactccctacttcttcaagaaaagaag |
14276113 |
T |
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