View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_445 (Length: 245)
Name: NF10481A_low_445
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_445 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 29104100 - 29104326
Alignment:
| Q |
19 |
aatctgcaagagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtaga |
118 |
Q |
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| T |
29104100 |
aatctgcaagagtaatgagatactgcattgtttcctctgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtaga |
29104199 |
T |
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| Q |
119 |
ctcaaattcctaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaatt |
218 |
Q |
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| T |
29104200 |
ctcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctgttgaattaaacgagaaaatt |
29104299 |
T |
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| Q |
219 |
gattcagtctccggcaacaacacggtg |
245 |
Q |
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| T |
29104300 |
gattcaatctccggcaacaacacggtg |
29104326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 29089856 - 29090065
Alignment:
| Q |
36 |
agatactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtagactcaaattcctaaagaa |
135 |
Q |
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| T |
29089856 |
agatattgcattgtttgcgttgtaagggaatgaataccgccgaaattcgccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaa |
29089955 |
T |
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| Q |
136 |
gatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaattgattcagtctccggcaa |
235 |
Q |
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| T |
29089956 |
tatttcttacagattcaacgagtctttgttgtgaattatatgcttgagatttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaa |
29090055 |
T |
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| Q |
236 |
caacacggtg |
245 |
Q |
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| T |
29090056 |
caacatggtg |
29090065 |
T |
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