View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_446 (Length: 245)
Name: NF10481A_low_446
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_446 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 34293101 - 34293320
Alignment:
| Q |
10 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293101 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
34293200 |
T |
|
| Q |
110 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34293201 |
ttgcaaacttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctttgttgggttttgtacaagc |
34293300 |
T |
|
| Q |
210 |
ctaagtgatccatctatgtt |
229 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
34293301 |
ctaagtgatccatctttgtt |
34293320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 24486783 - 24486564
Alignment:
| Q |
10 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24486783 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
24486684 |
T |
|
| Q |
110 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24486683 |
ttgcaagcttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctctgttgggttttgtacaagc |
24486584 |
T |
|
| Q |
210 |
ctaagtgatccatctatgtt |
229 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
24486583 |
ctaagtgatccatctttgtt |
24486564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 24495117 - 24494898
Alignment:
| Q |
10 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495117 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
24495018 |
T |
|
| Q |
110 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24495017 |
ttgcaaacttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctatgttgggttttgtacaagc |
24494918 |
T |
|
| Q |
210 |
ctaagtgatccatctatgtt |
229 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
24494917 |
ctaagtgatccatctttgtt |
24494898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 59182 - 59037
Alignment:
| Q |
24 |
aatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaaga |
123 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||| || |||||||| || ||||| || || || |||||| |||| || ||| |||| || || |||| |
|
|
| T |
59182 |
aatgccttcttgcaaggaaaattatctgaagatgtgtatatgcagcagcccccaggttttatccattctgaatttcctcatcatatttgtaagctcaaga |
59083 |
T |
|
| Q |
124 |
aagctatatatggtttgagacaaacacctcgcgcgtggcatgattc |
169 |
Q |
| |
|
|||| || ||||||||| | || ||||||| || ||||||||||| |
|
|
| T |
59082 |
aagcaatttatggtttgtggcaggcacctcgtgcatggcatgattc |
59037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 81949 - 81833
Alignment:
| Q |
51 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatggtttgagacaaacac |
150 |
Q |
| |
|
|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| || || || || | |
|
|
| T |
81949 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatggattaaggcagactc |
81850 |
T |
|
| Q |
151 |
ctcgcgcgtggcatgat |
167 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
81849 |
ctcgagcatggcatgat |
81833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 32323741 - 32323656
Alignment:
| Q |
51 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
136 |
Q |
| |
|
|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| |
|
|
| T |
32323741 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
32323656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 18728777 - 18728692
Alignment:
| Q |
51 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
136 |
Q |
| |
|
|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| |
|
|
| T |
18728777 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
18728692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University