View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_451 (Length: 244)
Name: NF10481A_low_451
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_451 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4178919 - 4178690
Alignment:
| Q |
1 |
ggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattg |
100 |
Q |
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| T |
4178919 |
ggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcgatgatgtcaattctggtgtttgcagcaattg |
4178820 |
T |
|
| Q |
101 |
cattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178819 |
cattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttg |
4178720 |
T |
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| Q |
201 |
cagcatgcttttcgttgcatttcctactga |
230 |
Q |
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| T |
4178719 |
cagcatgcttttcgttgcatttcctactga |
4178690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4167992 - 4167766
Alignment:
| Q |
1 |
ggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| |
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| T |
4167992 |
ggatcaaccaaacttccacctcaagttgctgctaaataccgcatacggtttatagattttatgcatgcagtaatgtcaattctggtgtttgcagcaattg |
4167893 |
T |
|
| Q |
101 |
cattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttg |
200 |
Q |
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| T |
4167892 |
cattgtttgatcggaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgatttttg |
4167793 |
T |
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| Q |
201 |
cagcatgcttttcgttgcatttcctac |
227 |
Q |
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| T |
4167792 |
cagcatgcttttcgttacatttcctac |
4167766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 34944489 - 34944705
Alignment:
| Q |
12 |
acttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgat |
111 |
Q |
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|||||||| | || ||| ||||||||||| ||| ||| || ||||||||||||||||| ||||||||| |||| ||| |||| |||||| |||||||| |
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| T |
34944489 |
acttccacatgaacttgatgcaaaatatcaactaaggttcattgatttcatgcatgcaattatgtcaattttggttttttcagctattgcaatgtttgat |
34944588 |
T |
|
| Q |
112 |
cagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttt |
211 |
Q |
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|| |||||||| || || || |||||| ||| ||| | ||||| | ||||||| || || |||||||| | |||||| ||||| || |||||||| | |
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| T |
34944589 |
cataatgtggttaactgtttctttccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgt |
34944688 |
T |
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| Q |
212 |
tcgttgcatttcctact |
228 |
Q |
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| T |
34944689 |
ttgttgcatttcctact |
34944705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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