View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_452 (Length: 244)
Name: NF10481A_low_452
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_452 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 22679046 - 22679189
Alignment:
| Q |
79 |
attcactaagctcttattgattatgataaatctacgcagagagggctttatgtcggtgtcatctagtacacattataccttaaccaaagaagatgttggt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22679046 |
attcactaagctcttattgattatgataaatctacgcagagagggctttatgtcggtgtcatctggtacacattataccttaaccaaagaagatgttggt |
22679145 |
T |
|
| Q |
179 |
tgttgtttgactttttcatacacaccaattaattctgaaggtat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22679146 |
tgttgtttgactttttcatacacaccaattaattctgaaggtat |
22679189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 22680410 - 22680482
Alignment:
| Q |
150 |
attataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgaaggtat |
222 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22680410 |
attataccttgaccgaagaagatgttggttgttgtttgacttttgcatacacaccaattaattctgaaggtat |
22680482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 21227321 - 21227251
Alignment:
| Q |
152 |
tataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgaaggtat |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
21227321 |
tataccttgaccaaagaagatgttggttgttgtttgacttttgtatacataccaattaattttgaaggtat |
21227251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University