View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_454 (Length: 244)
Name: NF10481A_low_454
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_454 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 27560121 - 27559905
Alignment:
| Q |
18 |
gaatttgattgcaatgtttttcttttcctttgttttg----------catgtgtatctgctcctatactttccatatttctcaaacattatctgcattgt |
107 |
Q |
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| T |
27560121 |
gaatttgattgcaatgtttttcttttcctttgttttgttgtgttttgcatgtgtatctgctcctatactttccatatttctcaaacattatctgcattgt |
27560022 |
T |
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| Q |
108 |
gattttagaggccttcaagattgtctataatttcaaacaactcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaat |
207 |
Q |
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| T |
27560021 |
gattttagaggccttcaagattgtctataatttcaaacaactcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaat |
27559922 |
T |
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| Q |
208 |
ttgttctgggaatgtat |
224 |
Q |
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||||||||| ||||||| |
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| T |
27559921 |
ttgttctggaaatgtat |
27559905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 36667645 - 36667480
Alignment:
| Q |
46 |
tttgttttgcatgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgattttagaggccttcaagattgtctataatttcaaac |
145 |
Q |
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| T |
36667645 |
tttgttttgcatgtgtatctgcaactatactttccatgattctcaaacattatctgcattctgattttagaggcctt-aagattgtctctaatttcaaac |
36667547 |
T |
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| Q |
146 |
aactcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaatttgtt |
212 |
Q |
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| T |
36667546 |
aactcattaaggtgttttgttacagattgaaaagttacaggaggagaaccaggagttagaatttgtt |
36667480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 29409518 - 29409316
Alignment:
| Q |
22 |
ttgattgcaatgtttttcttttcctttgttttg-------catgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgatttta |
114 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||| |||||||||||||| |||||| |||||||| |
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| T |
29409518 |
ttgattgcaatgtttttcttttcctttgttttgtgttttgcttgtgtatctgcacctatattttccatgattctcaaacattatatgcattatgatttta |
29409419 |
T |
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| Q |
115 |
gaggccttcaagattgtctataa-----tttcaaacaactcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaattt |
209 |
Q |
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| T |
29409418 |
gtggccttcaagattgtctataactaattttcaaccaactcattaagatgttttgttacagattgaaaagttacaggaggagaatcgggagttagaattt |
29409319 |
T |
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| Q |
210 |
gtt |
212 |
Q |
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||| |
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| T |
29409318 |
gtt |
29409316 |
T |
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