View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_46 (Length: 422)
Name: NF10481A_low_46
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_46 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 14953698 - 14953395
Alignment:
| Q |
6 |
tttggtgttgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt |
105 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14953698 |
tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt |
14953599 |
T |
|
| Q |
106 |
cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagacggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa |
205 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14953598 |
cagtcagtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa |
14953499 |
T |
|
| Q |
206 |
tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg |
305 |
Q |
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| T |
14953498 |
tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg |
14953399 |
T |
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| Q |
306 |
taag |
309 |
Q |
| |
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|||| |
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| T |
14953398 |
taag |
14953395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 14953353 - 14953280
Alignment:
| Q |
349 |
gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14953353 |
gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttga |
14953280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 40833270 - 40833332
Alignment:
| Q |
359 |
gtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
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|||||||||||||||||| ||||||| |||| | |||||||||| |||||| |||||| ||||| |
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| T |
40833270 |
gtataaataccgtataaacatacggtcaacaatatttggtgtcaaatttgt-tttgtaatttga |
40833332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 4561422 - 4561725
Alignment:
| Q |
6 |
tttggtgttgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt |
105 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4561422 |
tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt |
4561521 |
T |
|
| Q |
106 |
cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagacggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa |
205 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4561522 |
cagtcggtgatctgaatctgagagttgcaggtcgtttgcagaagtggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa |
4561621 |
T |
|
| Q |
206 |
tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg |
305 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4561622 |
tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg |
4561721 |
T |
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| Q |
306 |
taag |
309 |
Q |
| |
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|||| |
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| T |
4561722 |
taag |
4561725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 4561772 - 4561845
Alignment:
| Q |
349 |
gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4561772 |
gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttga |
4561845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 5370828 - 5370525
Alignment:
| Q |
6 |
tttggtgttgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt |
105 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5370828 |
tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt |
5370729 |
T |
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| Q |
106 |
cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagacggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa |
205 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5370728 |
cagtcagtgatcagaatctgagagttgcaggtcgtttgcagaagaggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa |
5370629 |
T |
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| Q |
206 |
tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg |
305 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5370628 |
tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg |
5370529 |
T |
|
| Q |
306 |
taag |
309 |
Q |
| |
|
|||| |
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|
| T |
5370528 |
taag |
5370525 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 5370482 - 5370409
Alignment:
| Q |
349 |
gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5370482 |
gaacactgatatataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttga |
5370409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 46697191 - 46697258
Alignment:
| Q |
355 |
tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46697191 |
tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttga |
46697258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 46697010 - 46697047
Alignment:
| Q |
167 |
ttgttggtggtggtcagatctaagctgatcggagaaga |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
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| T |
46697010 |
ttgttggtggtggtcagatctgagctgatcggagaaga |
46697047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 23885914 - 23885853
Alignment:
| Q |
361 |
ataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
| |
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|||||||| |||||||||||| || ||||||||||| |||| ||||||||||||||||||| |
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| T |
23885914 |
ataaatactgtataaatatactgtaaacagtgtttgatgtctaatttgtgtttgtattttga |
23885853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 56398469 - 56398532
Alignment:
| Q |
358 |
tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
| |
|
|||| |||||| |||||| |||||| ||||||||||||| |||| ||||||||||||||||||| |
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| T |
56398469 |
tgtacaaatactgtataa-tatacgatgaacagtgtttgatgtctaatttgtgtttgtattttga |
56398532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 6284650 - 6284581
Alignment:
| Q |
353 |
actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttga |
422 |
Q |
| |
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|||||| ||| ||||||||||||| |||| |||| | |||||| |||| ||||||||||||||||||| |
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| T |
6284650 |
actgatatatgaataccgtataaagatactatgaataatgtttgatgtctaatttgtgtttgtattttga |
6284581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 37606037 - 37606069
Alignment:
| Q |
386 |
aacagtgtttggtgtcatatttgtgtttgtatt |
418 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
37606037 |
aacagtgtatggtgtcatatttgtgtttgtatt |
37606069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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