View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_464 (Length: 243)

Name: NF10481A_low_464
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_464
NF10481A_low_464
[»] chr1 (12 HSPs)
chr1 (1-226)||(4048443-4048668)
chr1 (72-162)||(43427401-43427491)
chr1 (149-226)||(7386682-7386759)
chr1 (165-221)||(28037679-28037735)
chr1 (148-221)||(14651010-14651080)
chr1 (148-221)||(14660801-14660871)
chr1 (147-226)||(49508557-49508636)
chr1 (141-218)||(39501135-39501212)
chr1 (147-210)||(45432812-45432875)
chr1 (148-214)||(33978180-33978246)
chr1 (149-226)||(27643355-27643432)
chr1 (141-194)||(38599037-38599090)
[»] chr2 (12 HSPs)
chr2 (141-226)||(37670695-37670780)
chr2 (153-226)||(8323522-8323595)
chr2 (149-206)||(4244397-4244454)
chr2 (141-218)||(10748060-10748137)
chr2 (95-163)||(17247364-17247432)
chr2 (148-214)||(36756954-36757020)
chr2 (147-214)||(43115039-43115106)
chr2 (165-226)||(33054866-33054927)
chr2 (147-211)||(648532-648596)
chr2 (147-226)||(4017103-4017182)
chr2 (147-226)||(24467313-24467392)
chr2 (147-209)||(30928232-30928294)
[»] chr8 (8 HSPs)
chr8 (141-218)||(9180724-9180801)
chr8 (141-218)||(11629510-11629587)
chr8 (148-226)||(10394649-10394727)
chr8 (141-218)||(34752683-34752760)
chr8 (147-223)||(5896301-5896377)
chr8 (95-226)||(32229983-32230114)
chr8 (147-226)||(35613624-35613703)
chr8 (149-226)||(16484140-16484217)
[»] chr6 (5 HSPs)
chr6 (141-218)||(10158948-10159025)
chr6 (176-221)||(14453391-14453436)
chr6 (148-221)||(21729822-21729895)
chr6 (140-209)||(25357649-25357718)
chr6 (142-226)||(21952473-21952557)
[»] chr4 (10 HSPs)
chr4 (141-218)||(42327896-42327973)
chr4 (90-203)||(39956211-39956324)
chr4 (149-226)||(43733928-43734005)
chr4 (141-214)||(32499556-32499629)
chr4 (147-199)||(42440985-42441038)
chr4 (165-221)||(5185471-5185527)
chr4 (135-209)||(16430971-16431045)
chr4 (148-214)||(54421407-54421473)
chr4 (150-214)||(23600141-23600205)
chr4 (159-207)||(38761389-38761437)
[»] chr7 (12 HSPs)
chr7 (95-223)||(31403776-31403904)
chr7 (81-187)||(3897948-3898054)
chr7 (69-162)||(3884123-3884216)
chr7 (149-209)||(18221472-18221532)
chr7 (150-226)||(43970061-43970137)
chr7 (141-214)||(41147764-41147837)
chr7 (149-226)||(42562037-42562114)
chr7 (159-226)||(27745716-27745783)
chr7 (148-214)||(31802482-31802548)
chr7 (148-226)||(40306468-40306546)
chr7 (69-163)||(42304924-42305018)
chr7 (141-214)||(12350734-12350807)
[»] chr3 (6 HSPs)
chr3 (141-226)||(4741576-4741661)
chr3 (148-226)||(29210844-29210922)
chr3 (159-221)||(54548318-54548380)
chr3 (153-221)||(38475633-38475701)
chr3 (177-221)||(51140161-51140205)
chr3 (165-221)||(52964141-52964197)
[»] chr5 (6 HSPs)
chr5 (148-221)||(10813136-10813209)
chr5 (141-214)||(23151279-23151352)
chr5 (141-214)||(28499186-28499259)
chr5 (147-226)||(6292442-6292521)
chr5 (147-226)||(29292925-29293004)
chr5 (177-221)||(39173579-39173623)
[»] scaffold0027 (1 HSPs)
scaffold0027 (167-226)||(140408-140466)
[»] scaffold0024 (1 HSPs)
scaffold0024 (147-226)||(69040-69119)
[»] scaffold0010 (1 HSPs)
scaffold0010 (147-226)||(236642-236720)
[»] scaffold0996 (1 HSPs)
scaffold0996 (148-214)||(1546-1612)
[»] scaffold0067 (1 HSPs)
scaffold0067 (141-214)||(10982-11055)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4048668 - 4048443
Alignment:
Q  1 atcaatcagttattttttagtttgattgcgagcttgttgtagatgcagtaaactcatctccagttccccataatgaattaggagatactattagtagatg 100  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||    
T  4048668 atcaatcagttcttttttagtctgattgcaagcttgttgtagatgcagtaaactcatcttcagttccccacaatgaattaggagatacaattagtagatg 4048569  T
Q  101 tcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcat 200  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||    
T  4048568 tcaggaccttttgtcaactcgcaataattttattgttagttatgtcaggaggcaagcaaataaagttgttcacactatagttagagcatctttatctcat 4048469  T
Q  201 cctagcccccatatcttttatgatgt 226  Q
    ||||||||||||||||||||||||||    
T  4048468 cctagcccccatatcttttatgatgt 4048443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 43427401 - 43427491
Alignment:
Q  72 aatgaattaggagatactattagtagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaata 162  Q
    ||||| || ||||||| ||||  ||||||| ||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||    
T  43427401 aatgagtttggagatattatttctagatgtaagaatctattgtcatctcgcaataattttattgtgagctatgtcaggaggcaaacaaata 43427491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 7386682 - 7386759
Alignment:
Q  149 gaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||| |||||||||| |||||||  || |||||||| ||||||||| |||||||||||||| | |||||||||||    
T  7386682 gaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgt 7386759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 28037679 - 28037735
Alignment:
Q  165 gttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||    
T  28037679 gttgctcatagtatagctagagcttctttatctcatcctagcccccatcttttttat 28037735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 14651010 - 14651080
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||| ||||||| ||||| ||||  |||||||||||||   |||||||||||||||||||||||||||||    
T  14651010 ggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14651080  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 14660801 - 14660871
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||| ||||||| ||||| ||||  |||||||||||||   |||||||||||||||||||||||||||||    
T  14660801 ggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14660871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 49508557 - 49508636
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||||||||||| || |||||||  ||||||||||| || ||||| || |||||||||||||| || ||||||||    
T  49508557 aggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatattttctatgatgt 49508636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 39501135 - 39501212
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttt 218  Q
    ||||| ||||||||| |||||| ||||||| ||| ||| |||||||||||  ||||||| ||||||| ||||||||||    
T  39501135 tatgttaggaggcaagcaaatagagttgcttatagtattgctagagcatcactatctcaccctagcctccatatcttt 39501212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 45432812 - 45432875
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagccccc 210  Q
    ||||||||||||||||| || |||||||  ||||||||||| || ||||| || ||||||||||    
T  45432812 aggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagccccc 45432875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 33978246 - 33978180
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    |||||||| | ||||  |||||||||| ||| |||||||| || |||| ||||||||||||||||||    
T  33978246 ggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatat 33978180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 27643432 - 27643355
Alignment:
Q  149 gaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||| | ||||| |||||||||| ||| ||||||||||| |||||||| ||||| ||| || | ||| |||||||    
T  27643432 gaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatgatgt 27643355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 38599037 - 38599090
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatcttta 194  Q
    ||||| |||||||||   |||||||||||||||| ||| |||||||||||||||    
T  38599037 tatgttaggaggcaagataataaagttgctcatagtattgctagagcatcttta 38599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 37670780 - 37670695
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||| || ||||||||||||||||||| ||||| ||| ||||||||||||||||| || |||||||||||||| |||||||||||    
T  37670780 tatgttagaaggcaaacaaataaagttgttcatagtattgctagagcatctttatcccaccctagcccccatattttttatgatgt 37670695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 8323595 - 8323522
Alignment:
Q  153 caaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||||||||||| ||||  ||| |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  8323595 caaacaaataaagttgcacatagcataactagagcatccttatctcatcctaacccccatatcttttataatgt 8323522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 4244397 - 4244454
Alignment:
Q  149 gaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagc 206  Q
    ||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||    
T  4244397 gaggcaagcaaatagagctgctcatagtatagctagagcatctttatctcatcctagc 4244454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 10748060 - 10748137
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttt 218  Q
    ||||| ||||||||| |||||| ||||||||||| ||| |||||||||||  ||||||| |||||||| |||||||||    
T  10748060 tatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagccctcatatcttt 10748137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 17247364 - 17247432
Alignment:
Q  95 tagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaataa 163  Q
    ||||||| || |||| |||||| ||||||||||||||||||| | ||||||||| ||||||||||||||    
T  17247364 tagatgtaaggatctattgtcatctcgcaataattttattgtgaattatgtcagaaggcaaacaaataa 17247432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 36757020 - 36756954
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    |||||||| | |||||||||||||||| ||| |||||||| || ||||| |||||||||||||||||    
T  36757020 ggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatat 36756954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 43115039 - 43115106
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    ||||||||||||||||| || |||||||  ||||||||||| || ||||| || ||||||||||||||    
T  43115039 aggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatat 43115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 33054866 - 33054927
Alignment:
Q  165 gttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||  ||||||||||||||||  ||||||| ||||||||| |||||||| |||||||    
T  33054866 gttgctcactctatagctagagcatccctatctcaccctagcccctatatctttgatgatgt 33054927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 648532 - 648596
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagccccca 211  Q
    ||||||||| |||||| ||| |||||||  ||||||||||| |||||||| || |||||||||||    
T  648532 aggaggcaagcaaatagagtggctcatagcatagctagagcttctttatcacaacctagccccca 648596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 4017182 - 4017103
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||| ||||| | ||||||||| | ||||| |||||||| |||||| | |||||||||||| | || ||||||||    
T  4017182 aggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgt 4017103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 24467313 - 24467392
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||| ||||| | ||||||||| | ||||| |||||||| |||||| | |||||||||||| | || ||||||||    
T  24467313 aggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgt 24467392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 30928232 - 30928294
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccc 209  Q
    |||||||||| |||||| |||||||||| ||| ||||||||  | |||||||||||| |||||    
T  30928232 aggaggcaaataaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 30928294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 9180801 - 9180724
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttt 218  Q
    ||||| ||||||||| |||||| ||||||||||| ||| |||||||||||  ||||||| ||||||||||||||||||    
T  9180801 tatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt 9180724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 11629510 - 11629587
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttt 218  Q
    ||||| ||||||||| |||||| ||||||||||| ||| ||||||||||| |||||||| ||||| ||||||||||||    
T  11629510 tatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctaggccccatatcttt 11629587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 10394649 - 10394727
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    |||||||||||||||| ||| |||||| ||| ||||| ||||||||||||||||||| |||| |||| ||| |||||||    
T  10394649 ggaggcaaacaaataaggttactcatagtattgctagcgcatctttatctcatcctaacccctatatttttcatgatgt 10394727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 34752760 - 34752683
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttt 218  Q
    ||||| ||||||||| |||||| | ||||||||| ||| |||||||||||  ||||||| ||||||||||||||||||    
T  34752760 tatgttaggaggcaagcaaatagaattgctcatagtattgctagagcatcactatctcaccctagcccccatatcttt 34752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 5896377 - 5896301
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatga 223  Q
    |||||||||  ||||| ||| ||||||| ||| ||||||||  | ||||||||||||||||||||||| ||| ||||    
T  5896377 aggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccccatatttttcatga 5896301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 32230114 - 32229983
Alignment:
Q  95 tagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatcttta 194  Q
    ||||||| || |||| ||| || | ||||||||||||||||| ||  ||||  ||||| ||  |||||  || ||||| |||||||||||||| || |||    
T  32230114 tagatgtaaggatctattggcagcccgcaataattttattgtgaggcatgttcggaggtaagtaaatagggtcgctcacactatagctagagcttcctta 32230015  T
Q  195 tctcatcctagcccccatatcttttatgatgt 226  Q
    ||||| |||||||  ||||| ||| |||||||    
T  32230014 tctcaccctagccttcatatttttaatgatgt 32229983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 35613624 - 35613703
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||| ||||| | ||||||||| | ||||| |||||||| |||||| | |||||||||||| | || ||||||||    
T  35613624 aggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgt 35613703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 16484217 - 16484140
Alignment:
Q  149 gaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||| | ||||| |||||||||| ||| ||||||||||| |||||||| ||||| ||| || | ||| |||||||    
T  16484217 gaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatgatgt 16484140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 10159025 - 10158948
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttt 218  Q
    ||||| ||||||||| |||||| ||||||||||| ||| |||||||||||  ||||||| ||||||||||||||||||    
T  10159025 tatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt 10158948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 14453436 - 14453391
Alignment:
Q  176 tatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  14453436 tatagctagagcatccttatctcatcctagcccccatatcttttat 14453391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 21729895 - 21729822
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||| ||||||| ||||| ||||  ||||||| | |||| ||||||||||||||||||||||||||||||    
T  21729895 ggaggcaaccaaataaggttgcacatagcatagctacaacatccttatctcatcctagcccccatatcttttat 21729822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 25357649 - 25357718
Alignment:
Q  140 ttatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccc 209  Q
    |||||||||||||||| ||||||| || |||||||   |||||||||  |  ||||||||||||||||||    
T  25357649 ttatgtcaggaggcaagcaaataaggtagctcataacttagctagagttttcttatctcatcctagcccc 25357718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 21952473 - 21952557
Alignment:
Q  142 atgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    |||| ||| ||||| ||||||| ||||||||| | ||||| ||||| || ||||| |||||||||||| || | || ||||||||    
T  21952473 atgttaggcggcaagcaaataaggttgctcattcaatagcaagagcttccttatcccatcctagccccaatgttttatatgatgt 21952557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 42327973 - 42327896
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttt 218  Q
    ||||| ||||||||| |||||| ||||||||||| ||| |||||||||||  ||||||| ||||||||||||||||||    
T  42327973 tatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatcttt 42327896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 39956211 - 39956324
Alignment:
Q  90 attagtagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaataaagttgctcatactatagctagagcat 189  Q
    |||| ||||||| || |||| || ||| ||| |||||  |||||||| ||||||||||| || |||||||||||||||  ||||| |||||||||| | |    
T  39956211 attactagatgtaaggatctattatcatctcacaatacctttattgtgagttatgtcagaagacaaacaaataaagttattcataatatagctagatcct 39956310  T
Q  190 ctttatctcatcct 203  Q
    | ||||||||||||    
T  39956311 ccttatctcatcct 39956324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 43733928 - 43734005
Alignment:
Q  149 gaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||| ||||||  || ||||||| ||| ||||||||  | ||||||||||||||||||||||||||| |||||||    
T  43733928 gaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccccatatctttcatgatgt 43734005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 32499556 - 32499629
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    ||||| ||||||||| ||||||  |||||||||| ||| ||| |||| ||  ||||||||||||||||||||||    
T  32499556 tatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatat 32499629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 42441038 - 42440985
Alignment:
Q  147 aggaggcaaa-caaataaagttgctcatactatagctagagcatctttatctca 199  Q
    |||||||||| | |||||||||||||||||| | ||||||||||||||||||||    
T  42441038 aggaggcaaagctaataaagttgctcatactgttgctagagcatctttatctca 42440985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 5185527 - 5185471
Alignment:
Q  165 gttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||||| |||||||||||| || |||||||||| |||||||||| | ||||||    
T  5185527 gttgctcatagtatagctagagcttccttatctcatcttagcccccatcttttttat 5185471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 16430971 - 16431045
Alignment:
Q  135 gttagttatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccc 209  Q
    |||||| |||| ||||||||| ||||||| ||||||||||   ||||| |||  || ||||||||||||||||||    
T  16430971 gttagtcatgttaggaggcaagcaaataaggttgctcatatgttagctcgaggttccttatctcatcctagcccc 16431045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 54421473 - 54421407
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    |||||||| | ||||| |||| ||||| ||| |||||||| || ||||| |||||||||||||||||    
T  54421473 ggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatat 54421407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 23600205 - 23600141
Alignment:
Q  150 aggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    |||||||||||||   ||||||||| |||||||||||||||  ||| |||  |||||||||||||    
T  23600205 aggcaaacaaatattattgctcataatatagctagagcatccctatatcacactagcccccatat 23600141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 38761437 - 38761389
Alignment:
Q  159 aataaagttgctcatactatagctagagcatctttatctcatcctagcc 207  Q
    ||||| |||||||||| ||| ||||||||||| |||||||| |||||||    
T  38761437 aataaggttgctcatagtattgctagagcatccttatctcaccctagcc 38761389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 31403776 - 31403904
Alignment:
Q  95 tagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatcttta 194  Q
    ||||||| || |||| || ||| ||| ||||||||||||||| || ||||||||||| ||||||||||  || |||||||  ||||||||||| |  |||    
T  31403776 tagatgtaaggatctattatcatctcacaataattttattgtgagctatgtcaggagacaaacaaatagggtagctcataacatagctagagctttctta 31403875  T
Q  195 tctcatcctagcccccatatcttttatga 223  Q
    ||||| ||||||| |||||| ||| ||||    
T  31403876 tctcaccctagcctccatatttttcatga 31403904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 3898054 - 3897948
Alignment:
Q  81 ggagatactattagtagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaataaagttgctcatactatag 180  Q
    ||||||| ||||  ||||||| || |||| |||||| |||  |||||||||||||| ||| ||||||| ||||||| |||||| || |||||||  ||||    
T  3898054 ggagatattatttatagatgtaaggatctattgtcatctcataataattttattgtgagtaatgtcagaaggcaaataaataaggtagctcataacatag 3897955  T
Q  181 ctagagc 187  Q
    |||||||    
T  3897954 ctagagc 3897948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 3884216 - 3884123
Alignment:
Q  69 cataatgaattaggagatactattagtagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaata 162  Q
    |||||||| || ||||||| ||||  ||||||| || |||| |||||| ||| ||||||||||||||| ||| |||||||||| ||| ||||||    
T  3884216 cataatgagttcggagatattatttctagatgtaaggatctattgtcatctcacaataattttattgtgagtaatgtcaggagacaagcaaata 3884123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 18221532 - 18221472
Alignment:
Q  149 gaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccc 209  Q
    ||||||| | ||||| |||||||||||||| ||||||||||| |||||||| |||||||||    
T  18221532 gaggcaagctaataaggttgctcatactattgctagagcatccttatctcaccctagcccc 18221472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 43970061 - 43970137
Alignment:
Q  150 aggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    |||||| ||||||| |||||||||| ||| |||||||| || |||||  |||||||||||||||| || ||||||||    
T  43970061 aggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattttctatgatgt 43970137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 41147764 - 41147837
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    ||||| ||||||||| ||||||  |||||||||| ||| ||| |||| ||  ||||||||||||||||||||||    
T  41147764 tatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatat 41147837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 42562037 - 42562114
Alignment:
Q  149 gaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||| ||||||| |||| |||| ||||| | |||||||| |||||| ||| || ||||||||| |||||||||||    
T  42562037 gaggcaagcaaataaggttgttcattctataaccagagcatccttatctaatcttaacccccatattttttatgatgt 42562114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 27745783 - 27745716
Alignment:
Q  159 aataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||| |||||||||| ||| ||||||||||| |||||||| ||||||||| || | ||| |||||||    
T  27745783 aataaggttgctcatagtatcgctagagcatccttatctcaccctagcccctatgtttttaatgatgt 27745716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 31802482 - 31802548
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    |||||||| | ||||| |||||||||| ||| |||||||| || |||| ||||||||||| ||||||    
T  31802482 ggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatcctagcctccatat 31802548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 40306468 - 40306546
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    |||| ||||||||||| || | ||||| ||| | |||||||||||||| |||| |||| | |||||| |||||||||||    
T  40306468 ggagacaaacaaataaggtagatcatagtattgttagagcatctttatttcattctagtctccatattttttatgatgt 40306546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 42305018 - 42304924
Alignment:
Q  69 cataatgaattaggagatactattagtagatgtcagaatcttttgtcaactcgcaataattttattgttagttatgtcaggaggcaaacaaataa 163  Q
    |||||||| || ||||||  ||||  |||||||  | |||| |||||| ||| ||||||||||||| | || ||||| |||||||||||||||||    
T  42305018 cataatgagttcggagatgttatttctagatgtatggatctattgtcatctcacaataattttattttgagctatgtgaggaggcaaacaaataa 42304924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 12350807 - 12350734
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    ||||| ||||||||| ||||||  |||||||||| ||| ||| |||| ||  |||||||||||| |||||||||    
T  12350807 tatgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcatcctatcccccatat 12350734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 4741661 - 4741576
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||| ||||||||  | |||||||||||||||| ||| |||||||||||||||||  | |||||||||||||| |||| ||||||    
T  4741661 tatgttaggaggcacgctaataaagttgctcatagtattgctagagcatctttatccaaccctagcccccatattttttgtgatgt 4741576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 29210922 - 29210844
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    |||||||| ||||||||||  ||||||  || |||||||| ||||||||| |||||| ||||||||| |||||||||||    
T  29210922 ggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcctaacccccatattttttatgatgt 29210844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 54548380 - 54548318
Alignment:
Q  159 aataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||| ||||||||||| |||||||||||| || ||||||||||||||||||||| | ||||||    
T  54548380 aatagagttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttat 54548318  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 38475633 - 38475701
Alignment:
Q  153 caaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    ||||||||||||||||| |||| |||| |||||||||| |||||||| ||||||| || ||| ||||||    
T  38475633 caaacaaataaagttgcacatagtataactagagcatccttatctcaccctagccaccgtattttttat 38475701  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 51140205 - 51140161
Alignment:
Q  177 atagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||    
T  51140205 atagctagagcatccttatgccatcctagcccccatatcttttat 51140161  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 52964197 - 52964141
Alignment:
Q  165 gttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||||| |||||||||| | || ||||||||||||||||||||| | ||||||    
T  52964197 gttgctcatagtatagctagatcttccttatctcatcctagcccccatcttttttat 52964141  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 10813209 - 10813136
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    |||||||| | ||||  |||||||||| |||||||||||| || ||||||||||||||||||||| | ||||||    
T  10813209 ggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttat 10813136  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 23151279 - 23151352
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    ||||| ||||||||| ||||||  |||||||||| ||| ||| |||| ||  ||||||||||||||||||||||    
T  23151279 tatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatat 23151352  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 28499186 - 28499259
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    ||||| ||||||||| ||||||  |||||||||| ||| ||| |||| ||  ||||||||||||||||||||||    
T  28499186 tatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatat 28499259  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 6292521 - 6292442
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||| ||||| | ||||||||| | ||||| |||||||| |||||| | |||||||||||| | || ||||||||    
T  6292521 aggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgt 6292442  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 29292925 - 29293004
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||| ||||| | ||||||||| | ||||| |||||||| || ||| | |||||||||||| |||| ||||||||    
T  29292925 aggaggcaagcaaatgaggttgctcattccatagcaagagcatccttgtctaaccctagcccccatgtcttatatgatgt 29293004  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 39173623 - 39173579
Alignment:
Q  177 atagctagagcatctttatctcatcctagcccccatatcttttat 221  Q
    ||||||| |||||| ||||||||||||||||  ||||||||||||    
T  39173623 atagctaaagcatccttatctcatcctagccttcatatcttttat 39173579  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 140466 - 140408
Alignment:
Q  167 tgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    |||||||| ||||| |||||| | |||||||||||||||||||||| |||||||||||||    
T  140466 tgctcatagtatagatagagcct-tttatctcatcctagcccccatgtcttttatgatgt 140408  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 69119 - 69040
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||| ||| |||||||||||||||||| ||| |||||||| |||||||  || | ||||| |||||| |||||||||||    
T  69119 aggagacaagcaaataaagttgctcatagtatcgctagagcgtctttattccaccatagcctccatattttttatgatgt 69040  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 236720 - 236642
Alignment:
Q  147 aggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatatcttttatgatgt 226  Q
    ||||||||| ||||||| || |||||||  ||||||||||| || ||||| || |||||||||||||| || ||||||||    
T  236720 aggaggcaagcaaataaggtagctcataacatagctagagcttccttatccca-cctagcccccatattttctatgatgt 236642  T

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Target: scaffold0996 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 1612 - 1546
Alignment:
Q  148 ggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    |||||||| | ||||  |||||||||| ||| |||||||| || |||| ||||||||||||||||||    
T  1612 ggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatat 1546  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 11055 - 10982
Alignment:
Q  141 tatgtcaggaggcaaacaaataaagttgctcatactatagctagagcatctttatctcatcctagcccccatat 214  Q
    ||||| ||||||||| ||||||  ||||||| || ||| ||| |||| ||  ||||||||||||||||||||||    
T  11055 tatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccccatat 10982  T

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