View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_468 (Length: 242)
Name: NF10481A_low_468
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_468 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31506893 - 31506658
Alignment:
| Q |
1 |
agatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
100 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506893 |
agatcttatttatgaatgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
31506794 |
T |
|
| Q |
101 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506793 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
31506694 |
T |
|
| Q |
201 |
tggaaatactattgtccttagagctagagcaatgtc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31506693 |
tggaaatactattgtccttagagctagagcaatgtc |
31506658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 34495866 - 34496101
Alignment:
| Q |
1 |
agatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34495866 |
agatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
34495965 |
T |
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| Q |
101 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34495966 |
tgtcggcaacaataccagcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagt |
34496065 |
T |
|
| Q |
201 |
tggaaatactattgtccttagagctagagcaatgtc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34496066 |
tggaaatactattgtccttagagctagagcaatgtc |
34496101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 27607413 - 27607648
Alignment:
| Q |
1 |
agatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27607413 |
agatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
27607512 |
T |
|
| Q |
101 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
200 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27607513 |
tgtcggcaacaatacctgcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagt |
27607612 |
T |
|
| Q |
201 |
tggaaatactattgtccttagagctagagcaatgtc |
236 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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|
| T |
27607613 |
tggaaatactattgtccttagagctagagctatgtc |
27607648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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