View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_47 (Length: 422)

Name: NF10481A_low_47
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_47
NF10481A_low_47
[»] chr2 (15 HSPs)
chr2 (169-407)||(36444882-36445119)
chr2 (21-146)||(34392127-34392251)
chr2 (39-153)||(10163501-10163615)
chr2 (23-122)||(7381695-7381794)
chr2 (34-146)||(23863849-23863958)
chr2 (21-116)||(21603960-21604055)
chr2 (25-137)||(14565908-14566019)
chr2 (21-124)||(37357988-37358091)
chr2 (89-153)||(3668048-3668112)
chr2 (63-148)||(41095830-41095914)
chr2 (21-146)||(4775635-4775760)
chr2 (70-128)||(4779635-4779692)
chr2 (13-82)||(37811084-37811153)
chr2 (17-87)||(3668320-3668390)
chr2 (71-138)||(25275676-25275741)
[»] chr5 (18 HSPs)
chr5 (15-153)||(38010652-38010790)
chr5 (15-153)||(13478083-13478221)
chr5 (15-153)||(29989957-29990095)
chr5 (15-153)||(13086748-13086886)
chr5 (21-153)||(13015382-13015514)
chr5 (15-151)||(13421050-13421186)
chr5 (64-147)||(37881185-37881268)
chr5 (20-138)||(33858592-33858709)
chr5 (21-146)||(1826260-1826384)
chr5 (21-138)||(11607588-11607704)
chr5 (21-122)||(19357330-19357431)
chr5 (21-126)||(9827789-9827894)
chr5 (21-138)||(39570097-39570213)
chr5 (40-153)||(10292893-10293004)
chr5 (36-146)||(33271630-33271739)
chr5 (75-138)||(42148201-42148263)
chr5 (15-82)||(35622811-35622878)
chr5 (15-66)||(35622939-35622990)
[»] chr3 (24 HSPs)
chr3 (15-153)||(47186170-47186308)
chr3 (14-153)||(31187108-31187247)
chr3 (14-153)||(42664667-42664806)
chr3 (16-153)||(34029329-34029466)
chr3 (20-133)||(50934500-50934613)
chr3 (21-138)||(44380255-44380371)
chr3 (21-142)||(47426351-47426471)
chr3 (19-146)||(33509679-33509805)
chr3 (12-73)||(21963073-21963134)
chr3 (33-146)||(37742738-37742850)
chr3 (72-145)||(6022998-6023071)
chr3 (28-128)||(35094554-35094655)
chr3 (22-88)||(32319468-32319534)
chr3 (22-116)||(39498744-39498838)
chr3 (21-86)||(10018671-10018736)
chr3 (15-82)||(53440541-53440608)
chr3 (21-86)||(10179868-10179933)
chr3 (63-138)||(17466316-17466390)
chr3 (15-82)||(42273329-42273396)
chr3 (21-68)||(43689404-43689451)
chr3 (15-66)||(46489652-46489703)
chr3 (15-82)||(46489764-46489831)
chr3 (21-86)||(10123211-10123276)
chr3 (14-66)||(34955067-34955119)
[»] chr4 (21 HSPs)
chr4 (15-153)||(52012773-52012911)
chr4 (21-153)||(9799401-9799533)
chr4 (14-153)||(47943152-47943292)
chr4 (20-146)||(33249420-33249545)
chr4 (21-146)||(12473705-12473829)
chr4 (21-146)||(12528114-12528238)
chr4 (29-146)||(21260803-21260919)
chr4 (43-113)||(46719953-46720023)
chr4 (21-146)||(22343338-22343462)
chr4 (21-138)||(35869625-35869741)
chr4 (21-137)||(51811915-51812030)
chr4 (21-114)||(52910126-52910219)
chr4 (21-117)||(49999662-49999758)
chr4 (21-97)||(55590483-55590559)
chr4 (20-106)||(34829168-34829254)
chr4 (105-153)||(46720200-46720249)
chr4 (13-82)||(54277631-54277700)
chr4 (15-66)||(28092740-28092791)
chr4 (15-82)||(28092852-28092919)
chr4 (24-79)||(49998486-49998541)
chr4 (86-144)||(33174581-33174636)
[»] chr1 (15 HSPs)
chr1 (15-153)||(8809678-8809816)
chr1 (21-153)||(35998253-35998385)
chr1 (21-146)||(29119370-29119494)
chr1 (21-146)||(32676137-32676261)
chr1 (21-146)||(2569038-2569161)
chr1 (16-81)||(18056134-18056199)
chr1 (27-153)||(35534413-35534535)
chr1 (21-113)||(25161310-25161402)
chr1 (21-117)||(6223052-6223148)
chr1 (33-138)||(8462141-8462245)
chr1 (21-60)||(16679829-16679868)
chr1 (21-73)||(46435571-46435623)
chr1 (57-112)||(3688917-3688972)
chr1 (24-102)||(7214500-7214578)
chr1 (21-66)||(5581281-5581326)
[»] chr6 (7 HSPs)
chr6 (15-153)||(34245562-34245700)
chr6 (21-153)||(11113557-11113684)
chr6 (20-146)||(1211890-1212015)
chr6 (21-128)||(5403940-5404046)
chr6 (25-141)||(32644888-32645002)
chr6 (21-85)||(11753168-11753232)
chr6 (15-82)||(31030087-31030154)
[»] chr8 (8 HSPs)
chr8 (15-153)||(1514798-1514936)
chr8 (27-138)||(18168392-18168503)
chr8 (27-138)||(18631949-18632060)
chr8 (21-146)||(41179609-41179733)
chr8 (21-146)||(24337876-24338000)
chr8 (28-146)||(4708353-4708470)
chr8 (21-138)||(11254082-11254197)
chr8 (20-153)||(32825874-32826006)
[»] scaffold0032 (1 HSPs)
scaffold0032 (21-134)||(34195-34306)
[»] chr7 (5 HSPs)
chr7 (21-138)||(35341537-35341653)
chr7 (21-141)||(48250155-48250274)
chr7 (21-146)||(48072390-48072512)
chr7 (24-113)||(31306951-31307041)
chr7 (84-138)||(32694624-32694677)
[»] scaffold0229 (1 HSPs)
scaffold0229 (20-146)||(13051-13177)
[»] scaffold0263 (2 HSPs)
scaffold0263 (21-122)||(23168-23263)
scaffold0263 (21-66)||(23094-23139)
[»] scaffold0519 (1 HSPs)
scaffold0519 (21-138)||(11196-11311)
[»] scaffold0464 (1 HSPs)
scaffold0464 (21-82)||(6425-6486)
[»] scaffold0163 (1 HSPs)
scaffold0163 (15-60)||(28119-28164)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 169 - 407
Target Start/End: Complemental strand, 36445119 - 36444882
Alignment:
Q  169 cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatannnnnnncactcacgttacgggactctaaacaaggtaggtagtctgcatg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||    
T  36445119 cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatatttttt-cactcacattacgggactctaaacaaggtaggtagtctgcatg 36445021  T
Q  269 tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttatatgatgaagagtatcatctattataattcgttttacacctttatcttt 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445020 tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttatatgatgaagagtatcatctattataattcgttttacacctttatcttt 36444921  T
Q  369 atttattgtagttcttgaattttgtctaatagccctgat 407  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36444920 atttattgtagttcttgaattttgtctaatagccctgat 36444882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 34392251 - 34392127
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||| ||||||||||| ||||||  |||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||    
T  34392251 cacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat-tt 34392153  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||||| |||||||||||||||||    
T  34392152 ttttaaagggtgtgccacatggcaca 34392127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 10163501 - 10163615
Alignment:
Q  39 gtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 138  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  10163501 gtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctac 10163600  T
Q  139 atggcacaccttaat 153  Q
    |||||| ||||||||    
T  10163601 atggcataccttaat 10163615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 7381695 - 7381794
Alignment:
Q  23 cttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttt 122  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatatttttt 7381794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 23863958 - 23863849
Alignment:
Q  34 ttaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgt 133  Q
    |||||||||||||| |||||  |||||  |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||  ||||||||| ||||    
T  23863958 ttaaggtaccaatggtatat--tattggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgt 23863862  T
Q  134 gccacatggcaca 146  Q
    |||||||||||||    
T  23863861 gccacatggcaca 23863849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 21603960 - 21604055
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 116  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||| | |||||  ||| |||||||||||||||||||||  |||||||||||||    
T  21603960 cacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 14566019 - 14565908
Alignment:
Q  25 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 124  Q
    ||||||||| ||||||||||||||||||||  ||||| |||  ||||||||| |||||||||| ||| ||||||| ||||| |||||||||| |||||||    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatata-gtttttt 14565921  T
Q  125 aaagtgtgtgcca 137  Q
    ||||  |||||||    
T  14565920 aaaggatgtgcca 14565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 37358091 - 37357988
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||||||||| |||||||||||||||| ||||||  |||||| ||| |||||||| ||| || |||||||||||||||||| |||||||| |||| | ||    
T  37358091 cacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatatttttt 37357992  T
Q  121 tttt 124  Q
    ||||    
T  37357991 tttt 37357988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 3668112 - 3668048
Alignment:
Q  89 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  3668112 ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaat 3668048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 41095914 - 41095830
Alignment:
Q  63 caataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacacc 148  Q
    |||| ||||||  |||| ||||||||||||||||||||| |||||||||||| || |||||||||  || ||||||||||||||||    
T  41095914 caattagagtgcaccacctaccaatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacacc 41095830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 4775635 - 4775760
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatatatgt 119  Q
    ||||| |||||||||||| |||||||| |||||| ||||| ||||| ||| |||  ||  ||||||| |||||||| ||| |  ||||||| |||||| |    
T  4775635 cacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatat-t 4775733  T
Q  120 tttttaaagtgtgtgccacatggcaca 146  Q
    |||||||||  ||||||||||||||||    
T  4775734 tttttaaaggatgtgccacatggcaca 4775760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 4779635 - 4779692
Alignment:
Q  70 agtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 128  Q
    |||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||    
T  4779635 agtgtgccgcctaacaatgttactttataaatactttatttgatatat-ttttttaaag 4779692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 37811084 - 37811153
Alignment:
Q  13 atggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||||| |||||||||||||||  | |||||||||||||||| |||| ||||| | |||||||||||||    
T  37811084 atggacaccacttgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccacata 37811153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 3668390 - 3668320
Alignment:
Q  17 acatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaat 87  Q
    |||||| ||||||| |||||||||||||||||||||||| |||||    |||||||||| |||||| ||||    
T  3668390 acatcatttgtgtatcattaaggtaccaatgttatataacattgattggtaagagtgtgtcacatatcaat 3668320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 25275741 - 25275676
Alignment:
Q  71 gtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 138  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||    
T  25275741 gtgtgccacctatcaatgttacttt-taaatactttatttgatata-cttttttaaaggatgtgccac 25275676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 38010790 - 38010652
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010790 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 38010691  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38010690 tatgttttttaaagtgtgtgccacatggcacaccttaat 38010652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 13478221 - 13478083
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  13478221 ggacaccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgata 13478122  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  13478121 tatgttttttaaagtgtgtgccacatgtcacaccttaat 13478083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 29989957 - 29990095
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  29989957 ggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgata 29990056  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  29990057 tatgttttttaaagtgtgtgccacatgtcacaccttaat 29990095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 13086748 - 13086886
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  13086748 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgata 13086847  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    | | ||||||||||||||||||||||| |||||||||||    
T  13086848 tgtattttttaaagtgtgtgccacatgtcacaccttaat 13086886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 13015382 - 13015514
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13015382 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatatatatt 13015481  T
Q  121 ttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||| ||||||||||| |||| ||||||    
T  13015482 ttttaaagtatgtgccacatgtcacatcttaat 13015514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 13421186 - 13421050
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||  || ||| |||||||||||||||||| |||||||| |||    
T  13421186 ggacatcacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaata 13421087  T
Q  115 tatgttttttaaagtgtgtgccacatggcacacctta 151  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  13421086 tatgttttttaaagtgtatgccacatgacacacctta 13421050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 37881185 - 37881268
Alignment:
Q  64 aataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacac 147  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  37881185 aataagagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatggtacac 37881268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 33858709 - 33858592
Alignment:
Q  20 tcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 119  Q
    |||| ||||||||||||||||||||||  ||||||  |||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||  |    
T  33858709 tcacctgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ct 33858611  T
Q  120 tttttaaagtgtgtgccac 138  Q
    ||||||||| |||||||||    
T  33858610 tttttaaagggtgtgccac 33858592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 1826260 - 1826384
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||| ||||||||| ||||||  ||||  |||| |||||||| ||| ||||||| ||||||| || || ||||||||||||||| ||    
T  1826260 cacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatat-tt 1826358  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    ||||||||| ||||||||||||||||    
T  1826359 ttttaaagtatgtgccacatggcaca 1826384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 11607704 - 11607588
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||| ||||||||||||||||||| ||||||  |||||||||| | |||||||||| ||||||| |||||||||||||  |||||||||||||  ||    
T  11607704 cacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatata-ctt 11607606  T
Q  121 ttttaaagtgtgtgccac 138  Q
    |||||||| |||||||||    
T  11607605 ttttaaagggtgtgccac 11607588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 19357431 - 19357330
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||||||||||||||| |||||||||| ||||||  |||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||    
T  19357431 cacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatatatttt 19357332  T
Q  121 tt 122  Q
    ||    
T  19357331 tt 19357330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 9827789 - 9827894
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||   ||   |||| ||||||| |||| ||||||| |||||||||||||| |||||||||||||| ||    
T  9827789 cacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatatatctt 9827888  T
Q  121 ttttaa 126  Q
    ||||||    
T  9827889 ttttaa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 39570213 - 39570097
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||||||||| |||||| ||| ||||| ||||||  |||| ||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||  ||    
T  39570213 cacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata-ctt 39570115  T
Q  121 ttttaaagtgtgtgccac 138  Q
    |||||||| |||||||||    
T  39570114 ttttaaagggtgtgccac 39570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 10292893 - 10293004
Alignment:
Q  40 taccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccaca 139  Q
    |||||||||||||||| |||| ||||||||| |||||||| ||| ||||||| ||| ||| |  ||||||||  |||| |||||||||| |||||||||     
T  10292893 taccaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttg--atattttttttaaagggtgtgccacg 10292990  T
Q  140 tggcacaccttaat 153  Q
    ||||||||||||||    
T  10292991 tggcacaccttaat 10293004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 33271630 - 33271739
Alignment:
Q  36 aaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgc 135  Q
    |||||||||||| ||||||  |||| ||||| |||||||| ||  || ||||||||||| |||||| ||||||||||||||| ||||||||||  || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatat-ttttttaaaggatgcgc 33271728  T
Q  136 cacatggcaca 146  Q
    ||| |||||||    
T  33271729 cacgtggcaca 33271739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 42148201 - 42148263
Alignment:
Q  75 gccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 138  Q
    ||||| |||||||||||||||||||||  |||||||||||||| |||||||||| |||| ||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac 42148263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 35622811 - 35622878
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||| |||||||||||||||  | |||||||||||||||| ||||  |||| | |||||||||||||    
T  35622811 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 35622878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 35622990 - 35622939
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaat 66  Q
    ||||| |||||||||||||||  | |||||||||||||||| ||||||||||    
T  35622990 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 35622939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 47186170 - 47186308
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186170 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 47186269  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47186270 tatgttttttaaagtgtgtgccacatggcacaccttaat 47186308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 31187247 - 31187108
Alignment:
Q  14 tggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgat 113  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  31187247 tggacaccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgat 31187148  T
Q  114 atatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  31187147 atatattttttaaagtgtgtgccacatgtcacaccttaat 31187108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 42664667 - 42664806
Alignment:
Q  14 tggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgat 113  Q
    |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  42664667 tggacaccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgat 42664766  T
Q  114 atatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  42664767 atatgttttttaaagtgtgtgccacatgtcacaccttaat 42664806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 34029466 - 34029329
Alignment:
Q  16 gacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatat 115  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  34029466 gacaccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatat 34029367  T
Q  116 atgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||||||||||| |||||  |||||||||||    
T  34029366 atgttttttaaagtgtgtgtcacatatcacaccttaat 34029329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 50934500 - 50934613
Alignment:
Q  20 tcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 119  Q
    |||||||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||| |    
T  50934500 tcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatattt 50934599  T
Q  120 tttttaaagtgtgt 133  Q
    | ||||||| ||||    
T  50934600 tatttaaagggtgt 50934613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 44380255 - 44380371
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||| | |||||| ||| || |||| ||||||||||||| ||||||||||||||  ||    
T  44380255 cacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatata-ctt 44380353  T
Q  121 ttttaaagtgtgtgccac 138  Q
    |||||||| |||||||||    
T  44380354 ttttaaagggtgtgccac 44380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 47426351 - 47426471
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||  ||||||  |||| ||||| |||||||| ||| || ||||||||||||||| || ||||||||||||||| ||    
T  47426351 cacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatat-tt 47426449  T
Q  121 ttttaaagtgtgtgccacatgg 142  Q
    |||||||| |||||||||||||    
T  47426450 ttttaaagggtgtgccacatgg 47426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 33509679 - 33509805
Alignment:
Q  19 atcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatg 118  Q
    |||| ||||||||||||||||||| |||  ||||||  |||||||||| |||||||||||| ||||||| |||||||||| || ||||||||||| |||     
T  33509679 atcatttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtat- 33509777  T
Q  119 ttttttaaagtgtgtgccacatggcaca 146  Q
    ||||||||||  ||||||||||||||||    
T  33509778 ttttttaaaggatgtgccacatggcaca 33509805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 21963134 - 21963073
Alignment:
Q  12 gatggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtg 73  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21963134 gatggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 37742738 - 37742850
Alignment:
Q  33 attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtg 132  Q
    ||||||||||||||| ||||||  ||||  |||| ||||| |||||| |||||||||||| |||  ||| ||||||||||||||| |||||||||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat-ttttttaaagagtg 37742836  T
Q  133 tgccacatggcaca 146  Q
    |||||| |||||||    
T  37742837 tgccacgtggcaca 37742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 6022998 - 6023071
Alignment:
Q  72 tgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcac 145  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  6022998 tgtgccacatactaatgttattttgtaagtactttatttgatatatattttttaaagggtgtgccacgtggcac 6023071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 35094554 - 35094655
Alignment:
Q  28 gtaccattaaggtaccaatgttatataatattgaccaataa--gagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttta 125  Q
    |||||||||| |||||| || ||||||  |||||| ||| |  |||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatat-tttttta 35094652  T
Q  126 aag 128  Q
    |||    
T  35094653 aag 35094655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  22 acttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatg 88  Q
    |||||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| ||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 39498838 - 39498744
Alignment:
Q  22 acttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 116  Q
    |||||||||||||||| ||||||||| |||||| |||||  |||| | |||||| ||| || | |||||| |||||||||| ||||||| |||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata 39498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 10018736 - 10018671
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaa 86  Q
    ||||||||||||||||| ||||||||||||||||  ||||  |||||| |||||||||| ||||||    
T  10018736 cacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 53440541 - 53440608
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||| |||||||||||||||  | |||||||||||||||| | |||||||| | |||||||||||||    
T  53440541 ggacaccacttgtgtaccattgggataccaatgttatataacactgaccaatgaaagtgtgccacata 53440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 10179933 - 10179868
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaa 86  Q
    ||||||||||||||||| ||||||||| ||||||  ||||  |||| |||||||||||| ||||||    
T  10179933 cacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 17466316 - 17466390
Alignment:
Q  63 caataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 138  Q
    |||| |||||||| ||| || ||||||||||||||||||  |||| ||||||||| |||||||||| || ||||||    
T  17466316 caattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat-ttttttaaagggtatgccac 17466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 42273329 - 42273396
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||| |||||||||||||||  | |||||||||||||||| ||||  |||| | |||||||||||||    
T  42273329 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 42273396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 43689404 - 43689451
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataa 68  Q
    |||||||||||||||  | |||||||||||||||| ||||||||||||    
T  43689404 cacttgtgtaccattgtgataccaatgttatataacattgaccaataa 43689451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 46489652 - 46489703
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaat 66  Q
    ||||| |||||||||||||||  | |||||||||||||||| ||||||||||    
T  46489652 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 46489703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 46489831 - 46489764
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||| |||||||||||||||  | |||||||||||||||| ||||  |||| | |||||||||||||    
T  46489831 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 46489764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 10123276 - 10123211
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaa 86  Q
    ||||||||||||||||| ||| ||||||||||||  | ||  |||||| |||||||||| ||||||    
T  10123276 cacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 34955067 - 34955119
Alignment:
Q  14 tggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaat 66  Q
    |||||| |||||||||||||||  | |||||||||||||||| |||| |||||    
T  34955067 tggacaccacttgtgtaccattgggataccaatgttatataacattggccaat 34955119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 52012773 - 52012911
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  52012773 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgata 52012872  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  52012873 tatgttttttaaagtgtgtgccacatgtcacaccttaat 52012911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 9799533 - 9799401
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  9799533 cacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatgtt 9799434  T
Q  121 ttttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||||||||||||| |||||| |||||||||||    
T  9799433 ttttaaagtgtgtgtcacatgtcacaccttaat 9799401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 47943152 - 47943292
Alignment:
Q  14 tggacatcacttgtgtaccattaaggtaccaatgttatataatatt-gaccaataagagtgtgccacataccaatgttactttataaatactttatttga 112  Q
    |||||| |||||||||||||||||  |||||||||||||||||||| ||||||||| | |||||||||||||||| ||| |||||||||| |||||||||    
T  47943152 tggacaccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttga 47943251  T
Q  113 tatatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  47943252 tatatgttttttaaaatgtgtgccacatgtcacaccttaat 47943292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 33249545 - 33249420
Alignment:
Q  20 tcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 119  Q
    ||||||||||||||||||||||| |||| ||||||  |||| ||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||      
T  33249545 tcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatat-a 33249447  T
Q  120 tttttaaagtgtgtgccacatggcaca 146  Q
    ||||||||| |||||||||||||||||    
T  33249446 tttttaaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 12473705 - 12473829
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||| ||||||||||||||||||| ||||||  |||| ||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| ||    
T  12473705 cacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-tt 12473803  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||||| ||||| |||||| ||||    
T  12473804 ttttaaagggtgtggcacatgacaca 12473829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 12528114 - 12528238
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||| ||||||||||||||||||| ||||||  |||| ||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| ||    
T  12528114 cacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-tt 12528212  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||||| ||||| |||||| ||||    
T  12528213 ttttaaagggtgtggcacatgacaca 12528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 21260803 - 21260919
Alignment:
Q  29 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 128  Q
    ||||||||||||||||||| ||||||  |||| ||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||| ||||||||||    
T  21260803 taccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-ttttttaaag 21260901  T
Q  129 tgtgtgccacatggcaca 146  Q
     |||||||||||||||||    
T  21260902 ggtgtgccacatggcaca 21260919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 46719953 - 46720023
Alignment:
Q  43 caatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgat 113  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 22343338 - 22343462
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||  || |||||||||||||||||| ||||||||||||||| |     
T  22343338 cacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat-ta 22343436  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    ||||||||  ||||||||||| ||||    
T  22343437 ttttaaaggatgtgccacatgacaca 22343462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 35869741 - 35869625
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||| | | |||||||| ||||||||||||| |||||||  |||||||||||||  ||    
T  35869741 cacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata-ctt 35869643  T
Q  121 ttttaaagtgtgtgccac 138  Q
    |||||||| |||||||||    
T  35869642 ttttaaagggtgtgccac 35869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 51811915 - 51812030
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||| |||||||||||||||| ||| | |||||| ||||| ||||| ||||| |||||| |||||||||||||||||||||  ||| |||||||||| ||    
T  51811915 cactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat-tt 51812013  T
Q  121 ttttaaagtgtgtgcca 137  Q
    |||||||| ||||||||    
T  51812014 ttttaaagggtgtgcca 51812030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    |||||||||||||| | |||||||||||||||||  |||| ||||| | |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 49999758 - 49999662
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatat 117  Q
    |||||||||||||| ||| ||| |||||||| |   ||||  |||| |||||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 55590483 - 55590559
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttat 97  Q
    ||||||||||||||||||||||||||| ||||||  ||||| |||| | |||||| ||| |||||||||||||||||    
T  55590483 cacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 34829254 - 34829168
Alignment:
Q  20 tcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatacttt 106  Q
    |||||| ||||| ||||||||||||||| ||||||  | || ||||| | |||||| ||| ||||||||||||||||||||| ||||    
T  34829254 tcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 46720200 - 46720249
Alignment:
Q  105 ttatttgatatatgtttt-ttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaat 46720249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 54277700 - 54277631
Alignment:
Q  13 atggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||||| |||||||||||||||  | |||||||||||||||| ||||  |||| | |||||||||||||    
T  54277700 atggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 54277631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 28092740 - 28092791
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaat 66  Q
    ||||| |||||||||||||||  | |||||||||||||||| ||||||||||    
T  28092740 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 28092791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 28092919 - 28092852
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||| |||||||||||||||  | |||||||||||||||| ||||  |||| | |||||||||||||    
T  28092919 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 28092852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  24 ttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccac 79  Q
    ||||||||||||||||||||||| |||||||  |||| ||||| || |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 33174581 - 33174636
Alignment:
Q  86 atgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggca 144  Q
    ||||||||||||||||  |||||||||||||   ||||||||| ||||||||| |||||    
T  33174581 atgttactttataaatgttttatttgatata---tttttaaagggtgtgccacgtggca 33174636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 8809816 - 8809678
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  8809816 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgata 8809717  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  8809716 tatgttttttaaagtgtgtgccacatgtcacaccttaat 8809678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 35998253 - 35998385
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||| ||||||| |  ||||||| |||||||||    
T  35998253 cacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgtt 35998352  T
Q  121 ttttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||||||||||||||||||||||||| ||||||    
T  35998353 ttttaaagtgtgtgccacatggcacatcttaat 35998385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 29119494 - 29119370
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| || || |||||||||||| || ||||||||||||||| ||    
T  29119494 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatat-tt 29119396  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||||| |||||||||||||||||    
T  29119395 ttttaaagggtgtgccacatggcaca 29119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 32676137 - 32676261
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||  |||| ||||| ||| ||  |||| ||||||||||||||||||||| ||||||||||||||| ||    
T  32676137 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat-tt 32676235  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    ||||||||  ||||||||||||||||    
T  32676236 ttttaaagcatgtgccacatggcaca 32676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 2569038 - 2569161
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||| |||||||||||| |||||||||||| |||  ||| ||||||||||||||  ||    
T  2569038 cacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata--tt 2569135  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||||| ||||||||  |||||||    
T  2569136 ttttaaagggtgtgccatgtggcaca 2569161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 18056199 - 18056134
Alignment:
Q  16 gacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacat 81  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||| | ||||||||||||    
T  18056199 gacaccacttgtgtaccattaaactaccaatgttatataatattgaccaatgaaagtgtgccacat 18056134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 35534413 - 35534535
Alignment:
Q  27 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 126  Q
    |||| ||||||| |||||||||||||||| ||||  || | |||||||||||||||| ||||| | ||||||| |  ||||||| |||    ||||||||    
T  35534413 tgtatcattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaata----ttttttaa 35534508  T
Q  127 agtgtgtgccacatggcacaccttaat 153  Q
    || |||||||||||| |||||||||||    
T  35534509 agggtgtgccacatgacacaccttaat 35534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 25161310 - 25161402
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgat 113  Q
    ||||||||||||||||| ||  ||||| ||||||  |||||||||| | |||||||||| || ||||||||||||||||||  ||||||||||    
T  25161310 cacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 6223052 - 6223148
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatat 117  Q
    ||||||||||||||||| ||| ||||||||||||  ||||| |||| |  ||||| || ||| |||||||| ||||||| || ||||||||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatat 6223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 8462141 - 8462245
Alignment:
Q  33 attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtg 132  Q
    ||||| ||||||||| ||||||  ||||| |||| | |||||||||| ||||||||||| |||||||||  ||||||| |||||  |||||||||| | |    
T  8462141 attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatata-cttttttaaagggcg 8462239  T
Q  133 tgccac 138  Q
    ||||||    
T  8462240 tgccac 8462245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 16679868 - 16679829
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattg 60  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactattg 16679829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 46435623 - 46435571
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtg 73  Q
    ||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||    
T  46435623 cacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 3688972 - 3688917
Alignment:
Q  57 attgaccaataagagtgtgccacataccaatgttactttataaatactttatttga 112  Q
    |||||||||| ||||||| | || |||||||||||||||||||||  |||||||||    
T  3688972 attgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 7214578 - 7214500
Alignment:
Q  24 ttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaata 102  Q
    ||||||||||||||||||| |||  |||||| |||||  |||| |||||||| ||| || | || ||||||||||||||    
T  7214578 ttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttataaata 7214500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 5581281 - 5581326
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaat 66  Q
    |||||||||||||||| | ||| |||||||||||| ||||||||||    
T  5581281 cacttgtgtaccattaggatactaatgttatataacattgaccaat 5581326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 34245562 - 34245700
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| |||||||||||||||||||||  |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  34245562 ggacaccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgata 34245661  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  34245662 tatgttttttaaagtgtgtgccacatgacacaccttaat 34245700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 11113557 - 11113684
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||| ||||||||||| ||| | |||||||||||     ||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat-----tt 11113651  T
Q  121 ttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||||||||  || ||||||||||||||||||||    
T  11113652 ttttaaaggatgcgccacatggcacaccttaat 11113684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 1212015 - 1211890
Alignment:
Q  20 tcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 119  Q
    |||||||||||||||||||||||||||| ||||||  |||| | ||| || ||||||||| |  ||||||||||||||  || ||||||||||||||| |    
T  1212015 tcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-t 1211917  T
Q  120 tttttaaagtgtgtgccacatggcaca 146  Q
    ||||||||| ||||||||| |||||||    
T  1211916 tttttaaagggtgtgccacgtggcaca 1211890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 5404046 - 5403940
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||||||||||||||||||||| |||| |||||| |||||  || | ||||| |||||| |||||||||||||||||| ||  |||||||||||||| ||    
T  5404046 cacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatat-tt 5403948  T
Q  121 ttttaaag 128  Q
    ||||||||    
T  5403947 ttttaaag 5403940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 32645002 - 32644888
Alignment:
Q  25 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 124  Q
    |||||||||||||| || | ||  ||||||  |||| ||||| |  ||||| ||| ||| |||||||||||| |||||||||||||| ||||| ||||||    
T  32645002 tgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgttatat-tttttt 32644905  T
Q  125 aaagtgtgtgccacatg 141  Q
    |||| ||||||||||||    
T  32644904 aaagggtgtgccacatg 32644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 11753168 - 11753232
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacatacca 85  Q
    ||||||||||||||||||||||||||| ||||||  || | ||||| ||||||| |||| |||||    
T  11753168 cacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 31030087 - 31030154
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    ||||| |||||| ||||| ||  | |||||||||||||||||||||  |||||| |||||||||||||    
T  31030087 ggacaccacttgcgtaccgttgggataccaatgttatataatattggtcaataacagtgtgccacata 31030154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 1514798 - 1514936
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 114  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  1514798 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgata 1514897  T
Q  115 tatgttttttaaagtgtgtgccacatggcacaccttaat 153  Q
    ||| ||||||||| ||||| ||| ||| |||||||||||    
T  1514898 tatattttttaaaatgtgtaccatatgtcacaccttaat 1514936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 18168392 - 18168503
Alignment:
Q  27 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 126  Q
    ||||||||||||||||||||| ||||||  ||||| |||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  127 agtgtgtgccac 138  Q
    ||  ||||||||    
T  18168492 aggatgtgccac 18168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 18631949 - 18632060
Alignment:
Q  27 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 126  Q
    ||||||||||||||||||||| ||||||  ||||| |||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  127 agtgtgtgccac 138  Q
    ||  ||||||||    
T  18632049 aggatgtgccac 18632060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 41179733 - 41179609
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||  |||| ||||| | |||||| ||| |||| ||||||||||||||||  ||||||| |||||| ||    
T  41179733 cacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat-tt 41179635  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||| |  ||||||||||||||||    
T  41179634 ttttaatggatgtgccacatggcaca 41179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 24338000 - 24337876
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||| ||||||||| ||||| ||||||  || |  |||| |||||||||||  |||||||||||||||||| || |||||||||||||||  |    
T  24338000 cacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatat-at 24337902  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||||| ||||||||||| |||||    
T  24337901 ttttaaagggtgtgccacatagcaca 24337876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 4708470 - 4708353
Alignment:
Q  28 gtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaa 127  Q
    |||||| |||||||||||||  |||||  ||   ||||| | |||||| ||| |||||||||||||||||||||  ||||||||||||||  ||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaa 4708372  T
Q  128 gtgtgtgccacatggcaca 146  Q
    | ||||||||| |||||||    
T  4708371 gggtgtgccacgtggcaca 4708353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 11254197 - 11254082
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||||||||||||||||  |||||||| ||||||  |||||||| ||  ||| | |||| |||||||||||||||||||||  |||||||||||||   |    
T  11254197 cacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-cat 11254100  T
Q  121 ttttaaagtgtgtgccac 138  Q
    |||||||| |||||||||    
T  11254099 ttttaaagggtgtgccac 11254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 32826006 - 32825874
Alignment:
Q  20 tcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 119  Q
    |||||||||||||||||| ||| ||||||| ||||  |||| ||||| ||||| || |||||| |||||||| ||||||  |  |||||||||||||| |    
T  32826006 tcacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatat-t 32825908  T
Q  120 tttttaaagtgtgtgccacatggcacaccttaat 153  Q
    |||| ||||  |||| |||||| |||| ||||||    
T  32825907 ttttaaaaggttgtgtcacatgacacatcttaat 32825874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 34195 - 34306
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||  ||    
T  34195 cacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata--tt 34292  T
Q  121 ttttaaagtgtgtg 134  Q
    |||||||| |||||    
T  34293 ttttaaagggtgtg 34306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 35341537 - 35341653
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||  ||    
T  35341537 cacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ctt 35341635  T
Q  121 ttttaaagtgtgtgccac 138  Q
    |||||||| |||||||||    
T  35341636 ttttaaagggtgtgccac 35341653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 48250155 - 48250274
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||||||||||||||||||| ||||||  ||||  |||| |||||||||||| |||||||||||||||||| || ||||||||||||| | ||    
T  48250155 cacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat-tttt 48250253  T
Q  121 ttttaaagtgtgtgccacatg 141  Q
    |||||||| || ||| |||||    
T  48250254 ttttaaagggtatgctacatg 48250274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 48072390 - 48072512
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    ||||||||||| |||||||||||||  |  ||||  ||||| |||| ||||||||||||||  |||||||| |||||||||| |||||||||| ||| ||    
T  48072390 cacttgtgtactattaaggtaccaa--tagtataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat-tt 48072486  T
Q  121 ttttaaagtgtgtgccacatggcaca 146  Q
    |||||||| ||||||||| |||||||    
T  48072487 ttttaaagggtgtgccacgtggcaca 48072512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  24 ttgtgtaccattaaggtaccaatgttatataatattgaccaata-agagtgtgccacataccaatgttactttataaatactttatttgat 113  Q
    |||||||||||||| ||| ||||| ||||||  |||| |||||  | ||||||| || ||||||||||||||||||||| |||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 32694677 - 32694624
Alignment:
Q  84 caatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 138  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  32694677 caatgttactttataaattctttatttgatatat-ttttttaaagggtgtgccac 32694624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 13177 - 13051
Alignment:
Q  20 tcacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 119  Q
    |||||||||||||||||||||||||||| ||||||  |||| | ||| || ||||||||| |  ||||||||||||||  || ||||||||||||||| |    
T  13177 tcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-t 13079  T
Q  120 tttttaaagtg-tgtgccacatggcaca 146  Q
    ||||||||| | |||||||| |||||||    
T  13078 tttttaaagggttgtgccacgtggcaca 13051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 23263 - 23168
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||||||||||||||||||||| |      ||||  |||| ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||| ||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttt 23170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 23094 - 23139
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaat 66  Q
    |||||||||| |||||||||||||||| |||||| ||||| |||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaat 23139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 11196 - 11311
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 120  Q
    |||||||||||||||||  |||||||| ||||||  |||||||| ||  ||| | |||| |||||||||||||||||||||  |||||||||||||   |    
T  11196 cacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-cat 11293  T
Q  121 ttttaaagtgtgtgccac 138  Q
    |||||||| |||||||||    
T  11294 ttttaaagggtgtgccac 11311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 6425 - 6486
Alignment:
Q  21 cacttgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 82  Q
    |||||||||||||||  | || ||||||||||||| |||| |||||||  ||||||||||||    
T  6425 cacttgtgtaccattgggatatcaatgttatataacattggccaataaaggtgtgccacata 6486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 28164 - 28119
Alignment:
Q  15 ggacatcacttgtgtaccattaaggtaccaatgttatataatattg 60  Q
    ||||| ||||||||||||||| || |||| ||||||||||||||||    
T  28164 ggacaccacttgtgtaccattgagataccgatgttatataatattg 28119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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