View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_470 (Length: 242)
Name: NF10481A_low_470
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_470 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 50222720 - 50222889
Alignment:
| Q |
67 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
166 |
Q |
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| T |
50222720 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
50222819 |
T |
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| Q |
167 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
236 |
Q |
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| T |
50222820 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
50222889 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 50222574 - 50222640
Alignment:
| Q |
1 |
agagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
67 |
Q |
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| T |
50222574 |
agagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
50222640 |
T |
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