View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_476 (Length: 241)

Name: NF10481A_low_476
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_476
NF10481A_low_476
[»] chr3 (15 HSPs)
chr3 (12-241)||(9101179-9101408)
chr3 (12-237)||(9029068-9029294)
chr3 (12-241)||(8746905-8747134)
chr3 (16-241)||(9023401-9023626)
chr3 (12-241)||(9026105-9026334)
chr3 (12-241)||(9034571-9034800)
chr3 (12-187)||(9015428-9015602)
chr3 (44-174)||(9108812-9108942)
chr3 (50-195)||(8957118-8957263)
chr3 (60-196)||(8965272-8965408)
chr3 (60-190)||(8962563-8962693)
chr3 (14-190)||(9019290-9019466)
chr3 (50-192)||(8755581-8755723)
chr3 (54-181)||(9112118-9112245)
chr3 (60-197)||(8988340-8988477)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 9101408 - 9101179
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101408 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 9101309  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101308 ttgtaacagaaccagcagctccagcatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 9101209  T
Q  212 cataaggaaggggaagaacttcatagctga 241  Q
    ||||| ||||||||||||||||||||||||    
T  9101208 cataaagaaggggaagaacttcatagctga 9101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 9029294 - 9029068
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatc-atcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaa 110  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9029294 atgaaatccacaagaaaataagtggaatccatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaa 9029195  T
Q  111 cttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatga 210  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  9029194 cttgtaatagatccagcagctccagcatcaggacctggtgctggagccaacgaaggactaaggtcttgggcagaggccacggtggcggcgaagatgatga 9029095  T
Q  211 ccataaggaaggggaagaacttcatag 237  Q
    ||| || ||||| ||||||||||||||    
T  9029094 ccaaaaagaaggagaagaacttcatag 9029068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 8747134 - 8746905
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||     
T  8747134 atgaaatccacaagaaaatgagtggaatcatcatttttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaat 8747035  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    |||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||    
T  8747034 ttgtaacagatccaacagctccaacatcaggacctggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagac 8746935  T
Q  212 cataaggaaggggaagaacttcatagctga 241  Q
     | || ||||| ||||||||||||||||||    
T  8746934 gaaaaagaaggagaagaacttcatagctga 8746905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 9023626 - 9023401
Alignment:
Q  16 aatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgt 115  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  9023626 aatccacaagaaaatgagtggaatcatcatgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgt 9023527  T
Q  116 aacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgaccata 215  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |    
T  9023526 aacagatccagcagctccagcatcaggacctggtgccggagccaacgagggactaaggtcttgggcagaggccactgtggcggcgaagatgatgaccaaa 9023427  T
Q  216 aggaaggggaagaacttcatagctga 241  Q
    | ||||| ||||||||| ||||||||    
T  9023426 aagaaggagaagaactttatagctga 9023401  T

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Target: chr3; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 9026334 - 9026105
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    |||||||||||||||||||||||| |||||| |||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  9026334 atgaaatccacaagaaaataagtggaatcattatgtttttagtgtttgaagatggcgatcattgacaatacaactgaaactccgatcattgccactgaac 9026235  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    ||||||||||||||||| |||||| |||||  |||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||    
T  9026234 ttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggactaagatcttgggcagaggccacggtggcggcgaagatgatgac 9026135  T
Q  212 cataaggaaggggaagaacttcatagctga 241  Q
    || || ||||| ||||||||||||||||||    
T  9026134 caaaaagaaggagaagaacttcatagctga 9026105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 9034800 - 9034571
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  9034800 atgaagtccacaagaaaataagtgaaatcatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaac 9034701  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    ||| |||||||||||||||||||| |||||| |||||||| ||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||  |||    
T  9034700 ttgcaacagatccagcagctccagcatcaggacctggtgccggagccaacgaaggactaaggtcttgggcagaggccacgatggcagcgaagatggcgac 9034601  T
Q  212 cataaggaaggggaagaacttcatagctga 241  Q
     | || ||||| |||||| || ||||||||    
T  9034600 gaaaaagaaggagaagaattttatagctga 9034571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 9015602 - 9015428
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    |||||||||||||||||||||||| |||||| || ||||||||| || ||||||||||||||||||||||||||||||||||| | ||||| |||||||     
T  9015602 atgaaatccacaagaaaataagtggaatcataat-tttttagtgtttgaagatggcgagcattgacaatacaattgaaactccaaccatagtcactgaat 9015504  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggc 187  Q
    |||||||| ||||||| ||||| | |||||| |||||||| |||| ||||||||| ||||||| ||| || |||||    
T  9015503 ttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggctgaggtcttgagccgaggc 9015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 9108942 - 9108812
Alignment:
Q  44 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcaggg 143  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||   ||||||     
T  9108942 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcagga 9108843  T
Q  144 cctggtgctggagccaacgagggactgaggt 174  Q
    |||| |||||||||||| |||||||||||||    
T  9108842 cctgatgctggagccaatgagggactgaggt 9108812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 8957263 - 8957118
Alignment:
Q  50 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 149  Q
    ||||| ||| || ||||||| ||||||||  ||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||  ||||| || |||    
T  8957263 ttagttcttgaaaatggcgaccattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggt 8957164  T
Q  150 gctggagccaacgagggactgaggttttgggcagaggccacggtgg 195  Q
    |||||||| ||||| ||||| |||| |||||| |||||||||||||    
T  8957163 gctggagctaacgacggactaaggtcttgggccgaggccacggtgg 8957118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 8965408 - 8965272
Alignment:
Q  60 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 159  Q
    ||||| |||||||||||||  ||||||||| |||||||||| ||||  ||||||||||||||||| ||||||||||  ||||| | ||||||||||||||    
T  8965408 aagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgctggagcca 8965309  T
Q  160 acgagggactgaggttttgggcagaggccacggtggc 196  Q
    |||| ||||| |||| |||||| |||||||| |||||    
T  8965308 acgacggactaaggtcttgggccgaggccactgtggc 8965272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 8962693 - 8962563
Alignment:
Q  60 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 159  Q
    ||||| ||||||||||| |  ||||||||| |||||||||||||||| |||| || ||||||||| ||| |||||| |||||| |||||||||||||| |    
T  8962693 aagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagcta 8962594  T
Q  160 acgagggactgaggttttgggcagaggccac 190  Q
    |||||||||| |||| |||||| ||||||||    
T  8962593 acgagggactaaggtcttgggccgaggccac 8962563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 9019466 - 9019290
Alignment:
Q  14 gaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaactt 113  Q
    ||||||||| ||||||| ||||   |||| ||||||| ||| ||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||     
T  9019466 gaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactc 9019367  T
Q  114 gtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccac 190  Q
    ||||||||||||  ||| |||  |||||| |||||||| |||||  | |||||||| |||| ||| || ||||||||    
T  9019366 gtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 9019290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 8755723 - 8755581
Alignment:
Q  50 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 149  Q
    ||||| ||| |||||||||||||| ||||| | ||| ||| |||| |||||||| |||||| ||||||||||||||||||| || | ||||||  |||||    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  150 gctggagccaacgagggactgaggttttgggcagaggccacgg 192  Q
    || |||||||||||||||||||||| ||| || || |||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccgaagccacgg 8755581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 9112245 - 9112118
Alignment:
Q  54 tgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctg 153  Q
    ||||||||||| || ||||||||||| |||||  || |||| ||||||||||||| | |||||| ||||||| ||||||| | ||||||  ||||||| |    
T  9112245 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccg 9112146  T
Q  154 gagccaacgagggactgaggttttgggc 181  Q
    ||||||||||||||||||||| ||||||    
T  9112145 gagccaacgagggactgaggtcttgggc 9112118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 8988477 - 8988340
Alignment:
Q  60 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 159  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||||||||  |||||||| |||| |  |||||||||   ||||| ||||||||||||| ||    
T  8988477 aagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgctggagaca 8988378  T
Q  160 acgagggactgaggttttgggcagaggccacggtggcg 197  Q
    |||||||||| |||| |||||| ||||| |||| ||||    
T  8988377 acgagggactaaggtcttgggccgaggctacggcggcg 8988340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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