View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_479 (Length: 241)
Name: NF10481A_low_479
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_479 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 49165892 - 49166123
Alignment:
| Q |
1 |
gcgtgtacgaaattcatcctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaattgatgtat |
100 |
Q |
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| T |
49165892 |
gcgtgtacgaaattcattctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaattgatgtat |
49165991 |
T |
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| Q |
101 |
tatccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgcca |
200 |
Q |
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| T |
49165992 |
tatccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgcca |
49166091 |
T |
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| Q |
201 |
acaaggaatatgttgtgcttgatgttcatatt |
232 |
Q |
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| T |
49166092 |
acaaggaagatgttgtgcttgatgttcatatt |
49166123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 12875657 - 12875737
Alignment:
| Q |
152 |
gaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaacaaggaatatgttgtgcttgatgttcatatt |
232 |
Q |
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| T |
12875657 |
gaagaaaataaattgaaaggtggagatgcatgtgtctttgagctcatcaagagggaagatgttgtgcttaatgttcatatt |
12875737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 43752422 - 43752551
Alignment:
| Q |
103 |
tccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaac |
202 |
Q |
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| T |
43752422 |
tccatccgaaccgtcaaccaagttgagtacaggttggagtaagtttgtagaggaaaataaattggaggctggagatgtatgtgtttttgagctcgtcaat |
43752521 |
T |
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| Q |
203 |
aaggaatatgttgtgcttgatgttcatatt |
232 |
Q |
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| T |
43752522 |
aaggaagatcttgtgtttgatgctcatatt |
43752551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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