View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_480 (Length: 241)
Name: NF10481A_low_480
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_480 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 24651626 - 24651482
Alignment:
| Q |
31 |
tgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaagagtttattcctatgagtttcctagacacaaattc |
130 |
Q |
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| T |
24651626 |
tgaccattaacattaaattgtttaaatatacaaacaaatatgatatgttgtaatttattctaaaa-agtttattcctataagttacctacacacaaatta |
24651528 |
T |
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| Q |
131 |
attttaa-ttttttataagtttcatttagtgatagctaattatttc |
175 |
Q |
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| T |
24651527 |
attttaatttttttataagttgcatttagtgatagctaattatttc |
24651482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 24653654 - 24653486
Alignment:
| Q |
15 |
tggacatcatacattgtgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttatt----ctaaaagagtttattcctatg |
110 |
Q |
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| T |
24653654 |
tggacatcatacattgtgaccattaacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattacaaaaaaaaaaggttattcctata |
24653555 |
T |
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| Q |
111 |
agtttcctagacacaaattcattttaa---ttttttataag-tttcatttagtgatagctaattatttc |
175 |
Q |
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| T |
24653554 |
agttacctagacacaaattcattttaatttttttttttaagttttcatttagtgatagctaattatttc |
24653486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 24651388 - 24651445
Alignment:
| Q |
184 |
ttatgtgtcaactggaattagatttagccgaagaaattaaactctcggcagatattgt |
241 |
Q |
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| T |
24651388 |
ttatgtatcaactggaattagatttagccgaagaaattaaactctcggcagatattgt |
24651445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 24653388 - 24653445
Alignment:
| Q |
184 |
ttatgtgtcaactggaattagatttagccgaagaaattaaactctcggcagatattgt |
241 |
Q |
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| T |
24653388 |
ttatgtgtcaactggaattagatttagccgaagaaattaaactctcgggagatattgt |
24653445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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