View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_481 (Length: 241)
Name: NF10481A_low_481
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_481 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 9539211 - 9538981
Alignment:
| Q |
13 |
atgacacttgaaatgnnnnnnntaacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttnnnnnnn--tagtatatttaaaaaatcatat |
110 |
Q |
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| T |
9539211 |
atgacacttgaaatgaaaaaaataacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttaaaaaaaaatagtatatttaaaaaatcatat |
9539112 |
T |
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| Q |
111 |
ttgaacttagttcataatttaaataattgaacaatgttccaacaacattgatatatcactgaaaaatttgagtgagaagaatctgcaactatcaccagat |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| | | ||| |
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| T |
9539111 |
ttgaacttagttcataatttaaataattcaacaatgttccaacaaaattgatatatcattgaaaaatttgtgtgagaagaatctgcaactataaactgat |
9539012 |
T |
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| Q |
211 |
gcatgtgatgtcctcgaaagcttaactcagt |
241 |
Q |
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| T |
9539011 |
gcatgtgatgtcctcgaaagcttaactcagt |
9538981 |
T |
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