View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_488 (Length: 240)
Name: NF10481A_low_488
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_488 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 24493177 - 24493386
Alignment:
| Q |
23 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493177 |
tgttttccttggttattctacacaatatcactcttatatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
24493276 |
T |
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| Q |
123 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccac |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24493277 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgctcacttcccaacatccgtggctcccactccctaatatcttttcccacccac |
24493376 |
T |
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| Q |
223 |
atcagcctag |
232 |
Q |
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|||||||||| |
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| T |
24493377 |
atcagcctag |
24493386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 92542 - 92751
Alignment:
| Q |
23 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
122 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92542 |
tgttttacttggttattctacacaatatcactcttacatttgtctagatcgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
92641 |
T |
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| Q |
123 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
92642 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccactccccaacatccgtggctcccactccctaatatcttaacccacccac |
92741 |
T |
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| Q |
223 |
atcagcctag |
232 |
Q |
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|||||||||| |
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| T |
92742 |
atcagcctag |
92751 |
T |
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Back To:
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