View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_492 (Length: 239)
Name: NF10481A_low_492
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_492 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 31867816 - 31867595
Alignment:
| Q |
4 |
attgaaaactcgggaaaaa--cttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaaccaaatctatcata |
101 |
Q |
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| T |
31867816 |
attgaaaactcgggaaaaaaacttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaaccaaatctatcata |
31867717 |
T |
|
| Q |
102 |
tagattcttaaaactttatgatatgcagtcatttaatgttttacaaatataaataaaaatatcaatcatcaaacaaaatactaatgcttgtacatttggc |
201 |
Q |
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| T |
31867716 |
tagattcttaaaactttatgatatgcagtcatttaatgttttacaaatataaataaaaatatcaatcatcaaacaaaatactaatgcttgtacatttggc |
31867617 |
T |
|
| Q |
202 |
tcgataacatgatacccattaa |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
31867616 |
tcgataacatgatacccattaa |
31867595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 31858973 - 31858758
Alignment:
| Q |
4 |
attgaaaactcgggaaaaa-cttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaaccaaatctatcatat |
102 |
Q |
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|||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
31858973 |
attggaaactcgggaaaaaacttcccaagccttgaatgctatcatgaggaaactccactaagttcaattgtacttacaac-aaaagcaaatctatcatat |
31858875 |
T |
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| Q |
103 |
agattcttaaaactttatgatatgcagtcatttaatgttttacaaatat---aaataaaaatatcaatcatcaaacaaaatactaatgcttgtacatttg |
199 |
Q |
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| T |
31858874 |
ggattctgaaaa-tttatgatatgcagtcatttaatgtttaacgaatataaaaaataaaaataccaatcatcaaataaaatactaatgcttgcacattgg |
31858776 |
T |
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| Q |
200 |
gctcgataacatgatacc |
217 |
Q |
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||| |||||||||||||| |
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| T |
31858775 |
gcttgataacatgatacc |
31858758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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