View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_493 (Length: 239)
Name: NF10481A_low_493
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_493 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 25633606 - 25633365
Alignment:
| Q |
1 |
agaatcaattaattatatccagaatatattattagatgataaagataaagaagtcggtaacatta-ttgttaatcattacttgcagcctaagcaactaga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25633606 |
agaatcaattaattatatccagaatatattattagatgataaagataaagaagtcggtaacattagttgttaatcattacttgcagcctaagcaactaga |
25633507 |
T |
|
| Q |
100 |
tctaagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagat--acttcattaatg |
197 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
25633506 |
tctaagagtacttagctacactatagtatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatacacttcatcaatg |
25633407 |
T |
|
| Q |
198 |
agaataatacttttccatacatttttctggtttcctaatatt |
239 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
25633406 |
agaataatacttctccattcatttttctggtttcctaatatt |
25633365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 28669586 - 28669485
Alignment:
| Q |
75 |
attacttgcagcctaagcaactagatctaagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
173 |
Q |
| |
|
||||||||||| |||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
28669586 |
attacttgcagtctaagcaactag-tcgcagagtaattagctacactataacacatgatagcttaat----gtagacaagcattctgtctatatatactt |
28669492 |
T |
|
| Q |
174 |
gctgtaa |
180 |
Q |
| |
|
||||||| |
|
|
| T |
28669491 |
gctgtaa |
28669485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University