View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_496 (Length: 239)

Name: NF10481A_low_496
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_496
NF10481A_low_496
[»] chr2 (12 HSPs)
chr2 (1-116)||(39882757-39882873)
chr2 (2-117)||(39910121-39910237)
chr2 (1-117)||(39926727-39926844)
chr2 (1-108)||(39805134-39805242)
chr2 (1-104)||(39813662-39813766)
chr2 (2-108)||(39921440-39921547)
chr2 (1-104)||(39825171-39825275)
chr2 (180-224)||(39901954-39901998)
chr2 (180-224)||(39813845-39813889)
chr2 (180-224)||(39926910-39926954)
chr2 (180-224)||(39910303-39910347)
chr2 (180-224)||(39921622-39921666)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39882757 - 39882873
Alignment:
Q  1 gaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggact-aattccttcaactgaaagag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39882757 gaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggactaaattccttcaactgaaagag 39882856  T
Q  100 gatgagaaattgcatca 116  Q
    |||||||||||||||||    
T  39882857 gatgagaaattgcatca 39882873  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 39910121 - 39910237
Alignment:
Q  2 aaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggact-aattccttcaactgaaagagg 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  39910121 aaattcttcacaaggaaacatgagggtccaattgtacacgtgggccattcacatgcaagtgcttcaagcatatggactaaattccttcaactaaaagagg 39910220  T
Q  101 atgagaaattgcatcac 117  Q
    |||||||||||||||||    
T  39910221 atgagaaattgcatcac 39910237  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39926727 - 39926844
Alignment:
Q  1 gaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggact-aattccttcaactgaaagag 99  Q
    |||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  39926727 gaaattattcacaaggaaacatgagggtccaattgtacacatgggccattcacatgcaagtgcttcaagcatatggactaaattccttcaactaaaagag 39926826  T
Q  100 gatgagaaattgcatcac 117  Q
    ||||||||||||||||||    
T  39926827 gatgagaaattgcatcac 39926844  T

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Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 39805134 - 39805242
Alignment:
Q  1 gaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggac-taattccttcaactgaaagag 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||  ||||||||||||| ||||||    
T  39805134 gaaattcttcacaaggaaaaatgagggtccaattgtacatgtgggccgttcacatgcaagttcttcaagcatatggacaaaattccttcaactaaaagag 39805233  T
Q  100 gatgagaaa 108  Q
    |||||||||    
T  39805234 gatgagaaa 39805242  T

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Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39813662 - 39813766
Alignment:
Q  1 gaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggact-aattccttcaactgaaagag 99  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  39813662 gaaattcttcacaaggaaacatgagggtccaattgtacatgtgggccattcacatgcaagtgcttcaagcatatggactaaattccttcaactaaaagag 39813761  T
Q  100 gatga 104  Q
    |||||    
T  39813762 gatga 39813766  T

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Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 39921440 - 39921547
Alignment:
Q  2 aaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggact-aattccttcaactgaaagagg 100  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||||    
T  39921440 aaattcttcacaaggaaacatgagggtccaattgtacatgtgggccgttcacatgcaagtgcttcaagcatatggactaaattccttcaattaaaagagg 39921539  T
Q  101 atgagaaa 108  Q
    | ||||||    
T  39921540 aagagaaa 39921547  T

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Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39825171 - 39825275
Alignment:
Q  1 gaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggac-taattccttcaactgaaagag 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||  ||||||||||||| ||||||    
T  39825171 gaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggacaaaattccttcaactaaaagag 39825270  T
Q  100 gatga 104  Q
    |||||    
T  39825271 gatga 39825275  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 39901954 - 39901998
Alignment:
Q  180 ttggtcttggagggagcttttggaatcagtatttggagatgaaat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39901954 ttggtcttggagggagcttttggaatcagtatttggagatgaaat 39901998  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 39813845 - 39813889
Alignment:
Q  180 ttggtcttggagggagcttttggaatcagtatttggagatgaaat 224  Q
    |||| |||||||| ||||||||||||| |||||||||||||||||    
T  39813845 ttggccttggaggaagcttttggaatctgtatttggagatgaaat 39813889  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 39926910 - 39926954
Alignment:
Q  180 ttggtcttggagggagcttttggaatcagtatttggagatgaaat 224  Q
    ||||||||||||| |||| |||||||| |||||||||||||||||    
T  39926910 ttggtcttggaggaagctattggaatctgtatttggagatgaaat 39926954  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 39910303 - 39910347
Alignment:
Q  180 ttggtcttggagggagcttttggaatcagtatttggagatgaaat 224  Q
    ||||||||||||| |||| |||||||| ||||||||| |||||||    
T  39910303 ttggtcttggaggaagctattggaatctgtatttggaaatgaaat 39910347  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 39921622 - 39921666
Alignment:
Q  180 ttggtcttggagggagcttttggaatcagtatttggagatgaaat 224  Q
    ||||||||||||| |||| |||||||| |||||||||| ||||||    
T  39921622 ttggtcttggaggaagctattggaatctgtatttggaggtgaaat 39921666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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