View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_503 (Length: 238)

Name: NF10481A_low_503
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_503
NF10481A_low_503
[»] chr8 (2 HSPs)
chr8 (8-238)||(32853951-32854181)
chr8 (8-238)||(37177086-37177316)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 32854181 - 32853951
Alignment:
Q  8 tggacatcaaattaaaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgtcgttgct 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32854181 tggaaatcaaattaaaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgct 32854082  T
Q  108 gttattgaagaaacaaaggacctcacaaaactctcacaatatgaattgatgggttccttagaagctcatgaggaaagagtgaatagatataacaatcagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32854081 gttattgaagaaacaaaggacctcacaaaactctcacaatatgaactgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagc 32853982  T
Q  208 cattggagaatgtttttcaagcaaagatgaa 238  Q
    |||||||||||||||||||||||||||||||    
T  32853981 cattggagaatgtttttcaagcaaagatgaa 32853951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 37177316 - 37177086
Alignment:
Q  8 tggacatcaaattaaaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgtcgttgct 107  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37177316 tggaaatcaaattaaaagttgtggagaacaagttccagaaaagaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgct 37177217  T
Q  108 gttattgaagaaacaaaggacctcacaaaactctcacaatatgaattgatgggttccttagaagctcatgaggaaagagtgaatagatataacaatcagc 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37177216 gttattgaagaaacaaaggacctcacaaaactctcacaatataaattgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagc 37177117  T
Q  208 cattggagaatgtttttcaagcaaagatgaa 238  Q
    |||||||||||||||||||||||||||||||    
T  37177116 cattggagaatgtttttcaagcaaagatgaa 37177086  T

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