View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_513 (Length: 236)

Name: NF10481A_low_513
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_513
NF10481A_low_513
[»] chr7 (2 HSPs)
chr7 (35-107)||(48569018-48569090)
chr7 (166-215)||(48569141-48569190)
[»] chr8 (3 HSPs)
chr8 (37-100)||(10822202-10822265)
chr8 (37-100)||(36145131-36145194)
chr8 (172-216)||(10821893-10821937)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 48569018 - 48569090
Alignment:
Q  35 aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48569018 aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg 48569090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 48569141 - 48569190
Alignment:
Q  166 gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569141 gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatct 48569190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
Q  37 cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc 100  Q
    |||||||||||||||||||| |||   ||||||||||||||||| ||||||||||| |||||||    
T  10822265 cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc 10822202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
Q  37 cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc 100  Q
    |||||||||||||||||||| |||   |||||||||||||| |||||||||||||| |||||||    
T  36145131 cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc 36145194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 10821937 - 10821893
Alignment:
Q  172 ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctt 216  Q
    ||||||||||| || ||||| |||||||||||| |||||||||||    
T  10821937 ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctt 10821893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University