View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_517 (Length: 236)
Name: NF10481A_low_517
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_517 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 33342818 - 33343031
Alignment:
| Q |
4 |
atccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
103 |
Q |
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| T |
33342818 |
atccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
33342917 |
T |
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| Q |
104 |
actagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
203 |
Q |
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| T |
33342918 |
actagtcgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
33343017 |
T |
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| Q |
204 |
aggtatggatcatg |
217 |
Q |
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|||||||||||||| |
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| T |
33343018 |
aggtatggatcatg |
33343031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 35124094 - 35123881
Alignment:
| Q |
4 |
atccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
103 |
Q |
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| T |
35124094 |
atccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
35123995 |
T |
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| Q |
104 |
actagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
203 |
Q |
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| T |
35123994 |
actagtcgataaacttaattattggccaaaagaggtttaaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
35123895 |
T |
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| Q |
204 |
aggtatggatcatg |
217 |
Q |
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| T |
35123894 |
aggtatggatcatg |
35123881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 22507845 - 22507929
Alignment:
| Q |
12 |
cacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttg |
96 |
Q |
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||||||| |||||||||||| | |||||||| ||| || ||||| ||||| ||||||||||||| | |||||||||||||||| |
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| T |
22507845 |
cacaggaggatggaaatagagacttgcattgctaaagccgcaaaatatattgaaagcatacaatctgatgatggttcatggtttg |
22507929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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